X-Ray Diffraction data from Glycerol dehydrogenase, source of 5WQ5 structure

Data DOI: 10.15785/SBGRID/411 | ID: 411

5WQ5 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Murthy Laboratory, Indian Institute of Science

Release Date: Dec. 20, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/411

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/411 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/411 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/411 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/411 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 411 ; shasum -c files.sha'

Storage requirements: 8.7G

Biological Sample:

Glycerol dehydrogenase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Rotating anode

Data Creation Date:

Jan. 28, 2014

Related Datasets:

None


Cite this Dataset

Hatti, KS; Mathiharan, YK; Murthy, M; Srinivasan, N; Murthy, M. 2016. "X-Ray Diffraction data for: Glycerol dehydrogenase. PDB Code 5WQ5", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/411.

Download Citation

Dataset Description

The crystal was obtained serendipitously

Project Members

Name Additional Roles Affiliation While Working on the Project
Kaushik S HattiDepositorMolecular Biophysics Unit, Indian Institute of Science
Yamuna K MathiharanData CollectorMolecular Biophysics Unit, Indian Institute of Science
MRN MurthyMolecular Biophysics Unit, Indian Institute of Science
Narayanswamy SrinivasanMolecular Biophysics Unit, Indian Institute of Science
M.R.N. MurthyPIIndian Institute of Science

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.5418

Sweep:

SWEEP3

Files:

/programs/datagrid/411/E112AD230AH234A_ISII59-190114-3_####.osc

Images:

1 - 471

Beam:

(150.02, 150.06) -> (150.02, 149.9)

Distance:

-230.0 -> -229.35

Spacegroup:

P 4

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.21 6.0 2.21
Low resolution limit 56.58 56.6 2.25
Completeness 84.7 99.7 31.5
Multiplicity 7.2 10.8 1.3
I/sigma 7.4 18.1 1.2
Rmerge 0.228 0.105 0.545
CC half 0.985 0.996 0.539
Anomalous completeness 67.3 99.2 0.0
Anomalous multiplicity 4.1 4.1 4.1
Cell 178.67 178.67 80.13 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.5418

Sweep:

SWEEP3

Files:

/programs/datagrid/411/E112AD230AH234A_ISII59-190114-3_####.osc

Images:

1 - 471

Beam:

(150.02, 150.06) -> (150.02, 149.91)

Distance:

-230.0 -> -230.32

Spacegroup:

P 4

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.21 6.0 2.21
Low resolution limit 59.55 59.57 2.25
Completeness 85.0 99.7 31.4
Multiplicity 7.2 10.8 1.3
I/sigma 7.5 18.1 1.2
Rmerge 0.23 0.105 0.541
CC half 0.982 0.989 0.539
Anomalous completeness 68.4 99.3 0.0
Anomalous multiplicity 4.1 4.1 4.1
Cell 178.65 178.65 80.12 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.5418

Sweep:

SWEEP3

Files:

/programs/datagrid/411/E112AD230AH234A_ISII59-190114-3_####.osc

Images:

1 - 471

Beam:

(150.02, 150.06) -> (150.02, 149.9)

Distance:

-230.0 -> -230.17

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.57 6.97 2.57
Low resolution limit 67.74 67.76 2.61
Completeness 98.4 100.0 78.1
Multiplicity 5.2 5.3 3.6
I/sigma 3.3 5.5 1.4
Rmerge 0.428 0.175 1.029
CC half 0.849 0.957 0.312
Anomalous completeness 97.9 99.8 75.1
Anomalous multiplicity 2.6 2.6 2.6
Cell 178.9 80.172 179.342 90.0 90.036 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.