X-Ray Diffraction data from Drosophila DGluR1A Ligand Binding Domain Y792T mutant, source of 5ICT structure

Data DOI: 10.15785/SBGRID/406 | ID: 406

Publication DOI: 10.1016/j.neuron.2016.10.058

5ICT Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Mayer Laboratory, National Institutes of Health

Release Date: Dec. 13, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/406

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/406 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/406 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/406 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/406 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 406 ; shasum -c files.sha'

Storage requirements: 8.8G

Biological Sample:

Drosophila DGluR1A Ligand Binding Domain Y792T mutant

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline ID22, SERCAT, APS, Chicago, IL

Data Creation Date:

Feb. 16, 2016

Related Datasets:

None


Cite this Dataset

Mayer, ML. 2016. "X-Ray Diffraction data for: Drosophila DGluR1A Ligand Binding Domain Y792T mutant. PDB Code 5ICT", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/406.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Mark L MayerData Collector, DepositorNIH
Mark MayerPINational Institutes of Health

Reprocessing Instructions

Detector rayonix-mx300hs, x beam 149.677, y beam 144.942, distance 219.99, wavelength 1.00000

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/406/34A1b.####

Images:

1 - 320

Beam:

(149.87, 145.16) -> (149.87, 145.01)

Distance:

220.0 -> 219.95

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.53 4.15 1.53
Low resolution limit 53.2 53.23 1.56
Completeness 96.5 100.0 71.9
Multiplicity 5.9 6.1 3.5
I/sigma 11.6 29.7 0.9
Rmerge 0.075 0.033 1.007
CC half 0.998 0.999 0.422
Anomalous completeness 96.2 99.9 69.8
Anomalous multiplicity 3.1 3.1 3.1
Cell 53.202 58.384 99.75 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/406/34A1b.####

Images:

1 - 320

Beam:

(149.87, 145.16) -> (149.87, 144.94)

Distance:

220.0 -> 219.58

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.53 4.15 1.53
Low resolution limit 39.31 39.32 1.56
Completeness 96.5 100.0 72.5
Multiplicity 5.9 5.9 3.5
I/sigma 16.8 49.0 1.0
Rmerge 0.05 0.021 0.949
CC half 0.999 0.999 0.485
Anomalous completeness 95.9 99.7 70.1
Anomalous multiplicity 3.1 3.1 3.1
Cell 53.18 58.37 99.75 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/406/34A1b.####

Images:

1 - 320

Beam:

(149.87, 145.16) -> (149.87, 144.95)

Distance:

220.0 -> 219.83

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.53 4.15 1.53
Low resolution limit 46.93 46.95 1.56
Completeness 96.5 100.0 72.5
Multiplicity 5.9 5.9 3.5
I/sigma 16.8 49.0 1.0
Rmerge 0.05 0.021 0.946
CC half 0.999 0.999 0.483
Anomalous completeness 95.9 99.7 70.1
Anomalous multiplicity 3.1 3.1 3.1
Cell 53.18 58.37 99.75 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/406/34A1b.####

Images:

1 - 320

Beam:

(149.87, 145.16) -> (149.87, 144.95)

Distance:

220.0 -> 219.47

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.56 4.23 1.56
Low resolution limit 49.83 49.85 1.59
Completeness 97.9 100.0 79.3
Multiplicity 6.1 6.1 3.7
I/sigma 12.3 30.5 1.1
Rmerge 0.06 0.028 0.84
CC half 0.999 0.999 0.701
Anomalous completeness 97.6 100.0 78.5
Anomalous multiplicity 3.2 3.2 3.2
Cell 53.099 58.267 99.658 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.