X-Ray Diffraction data from Drosophila KaiR1D Ligand Binding Domain AP5 complex, source of 5EHS structure

Data DOI: 10.15785/SBGRID/404 | ID: 404

Publication DOI: 10.1016/j.neuron.2016.10.058

5EHS Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Mayer Laboratory, National Institutes of Health

Release Date: Dec. 13, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/404

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/404 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/404 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/404 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/404 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 404 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Drosophila KaiR1D Ligand Binding Domain AP5 complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline ID22, SERCAT, APS, Chicago, Illinois

Data Creation Date:

Oct. 23, 2015

Related Datasets:

None


Cite this Dataset

Dharkar, P; Mayer, ML. 2016. "X-Ray Diffraction data for: Drosophila KaiR1D Ligand Binding Domain AP5 complex. PDB Code 5EHS", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/404.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Mark L MayerData Collector, DepositorNIH
Poorva DharkarData CollectorNIH
Mark MayerPINational Institutes of Health

Reprocessing Instructions

Detector rayonix-mx300hs, x beam 150.071, y beam 144.750, distance 199.88, wavelength 1.00000

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/404/55D2b.####

Images:

1 - 400

Beam:

(149.87, 145.16) -> (149.87, 144.83)

Distance:

200.0 -> 200.3

Spacegroup:

P 31

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.7 4.61 1.7
Low resolution limit 47.38 47.39 1.73
Completeness 99.9 98.2 100.0
Multiplicity 3.2 3.2 3.1
I/sigma 6.0 10.6 1.0
Rmerge 0.062 0.049 0.726
CC half 0.994 0.987 0.432
Anomalous completeness 85.1 92.1 80.0
Anomalous multiplicity 1.7 1.7 1.7
Cell 54.704 54.704 147.892 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/404/55D2b.####

Images:

1 - 400

Beam:

(149.87, 145.16) -> (149.87, 144.77)

Distance:

200.0 -> 200.05

Spacegroup:

P 31

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.66 4.5 1.66
Low resolution limit 39.92 39.93 1.69
Completeness 99.3 96.4 100.0
Multiplicity 3.1 3.2 3.1
I/sigma 11.9 26.9 1.1
Rmerge 0.038 0.028 0.922
CC half 0.998 0.995 0.336
Anomalous completeness 81.2 84.0 78.9
Anomalous multiplicity 1.7 1.7 1.7
Cell 54.74 54.74 148.07 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/404/55D2b.####

Images:

1 - 400

Beam:

(149.87, 145.16) -> (149.87, 144.77)

Distance:

200.0 -> 200.33

Spacegroup:

P 31

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.66 4.5 1.66
Low resolution limit 39.92 39.93 1.69
Completeness 99.3 96.4 100.0
Multiplicity 3.1 3.2 3.1
I/sigma 11.9 27.0 1.1
Rmerge 0.038 0.028 0.925
CC half 0.998 0.996 0.334
Anomalous completeness 81.2 83.9 79.0
Anomalous multiplicity 1.7 1.7 1.7
Cell 54.74 54.74 148.06 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/404/55D2b.####

Images:

1 - 400

Beam:

(149.87, 145.16) -> (149.87, 144.76)

Distance:

200.0 -> 200.61

Spacegroup:

P 31

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.73 4.69 1.73
Low resolution limit 34.2 34.21 1.76
Completeness 99.6 97.9 94.9
Multiplicity 3.2 3.3 3.1
I/sigma 8.4 16.4 0.9
Rmerge 0.055 0.039 0.735
CC half 0.996 0.99 0.65
Anomalous completeness 85.0 92.0 75.5
Anomalous multiplicity 1.7 1.7 1.7
Cell 54.775 54.775 148.094 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.