X-Ray Diffraction data from Drosophila KaiR1D Ligand Binding Domain Glutamate complex, source of 5DTB structure

Data DOI: 10.15785/SBGRID/403 | ID: 403

Publication DOI: 10.1016/j.neuron.2016.10.058

5DTB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Mayer Laboratory, National Institutes of Health

Release Date: Dec. 13, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/403

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/403 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/403 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/403 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/403 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 403 ; shasum -c files.sha'

Storage requirements: 2.8G

Biological Sample:

Drosophila KaiR1D Ligand Binding Domain Glutamate complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ID22 SERCAT, APS, Chicago, Il.

Data Creation Date:

July 27, 2014

Related Datasets:

None


Cite this Dataset

Dharkar, P; Mayer, ML. 2016. "X-Ray Diffraction data for: Drosophila KaiR1D Ligand Binding Domain Glutamate complex. PDB Code 5DTB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/403.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Mark L MayerData Collector, DepositorNIH
Poorva DharkarData CollectorNIH
Mark MayerPINational Institutes of Health

Reprocessing Instructions

Detector rayonix-mx300hs; x beam 149.86, y beam 144.95, distance 178.937, wavelength 1.00000

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/403/39A2b_r1_1.####

Images:

1 - 100

Beam:

(149.87, 145.16) -> (149.87, 145.0)

Distance:

180.0 -> 179.77

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.58 4.29 1.58
Low resolution limit 38.43 38.44 1.61
Completeness 97.0 98.6 95.3
Multiplicity 8.2 7.4 8.5
I/sigma 10.2 30.3 0.7
Rmerge 0.091 0.042 3.42
CC half 0.994 0.99 0.327
Anomalous completeness 97.4 99.9 95.7
Anomalous multiplicity 4.3 4.3 4.3
Cell 87.87 87.87 183.53 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/403/39A2b_r1_1.####

Images:

1 - 100

Beam:

(149.87, 145.16) -> (149.87, 145.0)

Distance:

180.0 -> 179.74

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.58 4.29 1.58
Low resolution limit 63.47 63.52 1.61
Completeness 97.0 98.5 95.3
Multiplicity 8.2 7.4 8.5
I/sigma 10.2 30.2 0.7
Rmerge 0.091 0.042 3.425
CC half 0.998 0.997 0.345
Anomalous completeness 97.4 99.9 95.8
Anomalous multiplicity 4.3 4.3 4.3
Cell 87.87 87.87 183.53 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/403/39A2b_r1_1.####

Images:

1 - 100

Beam:

(149.87, 145.16) -> (149.87, 145.0)

Distance:

180.0 -> 179.7

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.55 4.2 1.55
Low resolution limit 43.88 43.9 1.58
Completeness 97.2 99.1 94.7
Multiplicity 8.4 7.7 8.5
I/sigma 7.0 41.4 0.1
Rmerge 0.107 0.05 8.056
CC half 0.988 0.978 0.338
Anomalous completeness 97.9 100.0 95.3
Anomalous multiplicity 4.4 4.4 4.4
Cell 87.762 87.762 183.378 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.