Data DOI: 10.15785/SBGRID/403 | ID: 403
Publication DOI: 10.1016/j.neuron.2016.10.058
5DTB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Mayer Laboratory, National Institutes of Health
Release Date: 13 Dec 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/403
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/403 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/403 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/403 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/403 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 403 ; shasum -c files.sha'
Storage requirements: 2.8G
Biological Sample:
Drosophila KaiR1D Ligand Binding Domain Glutamate complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ID22 SERCAT, APS, Chicago, Il.
Data Creation Date:
27 Jul 2014
Related Datasets:
None
Dharkar, P; Mayer, ML. 2016. "X-Ray Diffraction data for: Drosophila KaiR1D Ligand Binding Domain Glutamate complex. PDB Code 5DTB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/403.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Mark L Mayer | Data Collector, Depositor | NIH |
| Poorva Dharkar | Data Collector | NIH |
| Mark Mayer | PI | National Institutes of Health |
Detector rayonix-mx300hs; x beam 149.86, y beam 144.95, distance 178.937, wavelength 1.00000
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/403/39A2b_r1_1.####
Images:
1 - 100
Beam:
(149.87, 145.16) -> (149.87, 145.0)
Distance:
180.0 -> 179.77
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.58 | 4.29 | 1.58 |
| Low resolution limit | 38.43 | 38.44 | 1.61 |
| Completeness | 97.0 | 98.6 | 95.3 |
| Multiplicity | 8.2 | 7.4 | 8.5 |
| I/sigma | 10.2 | 30.3 | 0.7 |
| Rmerge | 0.091 | 0.042 | 3.42 |
| CC half | 0.994 | 0.99 | 0.327 |
| Anomalous completeness | 97.4 | 99.9 | 95.7 |
| Anomalous multiplicity | 4.3 | 4.3 | 4.3 |
| Cell | 87.87 | 87.87 | 183.53 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/403/39A2b_r1_1.####
Images:
1 - 100
Beam:
(149.87, 145.16) -> (149.87, 145.0)
Distance:
180.0 -> 179.74
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.58 | 4.29 | 1.58 |
| Low resolution limit | 63.47 | 63.52 | 1.61 |
| Completeness | 97.0 | 98.5 | 95.3 |
| Multiplicity | 8.2 | 7.4 | 8.5 |
| I/sigma | 10.2 | 30.2 | 0.7 |
| Rmerge | 0.091 | 0.042 | 3.425 |
| CC half | 0.998 | 0.997 | 0.345 |
| Anomalous completeness | 97.4 | 99.9 | 95.8 |
| Anomalous multiplicity | 4.3 | 4.3 | 4.3 |
| Cell | 87.87 | 87.87 | 183.53 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/403/39A2b_r1_1.####
Images:
1 - 100
Beam:
(149.87, 145.16) -> (149.87, 145.0)
Distance:
180.0 -> 179.7
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.55 | 4.2 | 1.55 |
| Low resolution limit | 43.88 | 43.9 | 1.58 |
| Completeness | 97.2 | 99.1 | 94.7 |
| Multiplicity | 8.4 | 7.7 | 8.5 |
| I/sigma | 7.0 | 41.4 | 0.1 |
| Rmerge | 0.107 | 0.05 | 8.056 |
| CC half | 0.988 | 0.978 | 0.338 |
| Anomalous completeness | 97.9 | 100.0 | 95.3 |
| Anomalous multiplicity | 4.4 | 4.4 | 4.4 |
| Cell | 87.762 | 87.762 | 183.378 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
