X-Ray Diffraction data from Drosophila KaiR1D Ligand Binding Domain Glutamate complex, source of 5DTB structure

Data DOI: 10.15785/SBGRID/403 | ID: 403

Publication DOI: 10.1016/j.neuron.2016.10.058

5DTB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Mayer Laboratory, National Institutes of Health

Release Date: Dec. 13, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/403

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/403 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/403 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/403 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/403 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 403 ; shasum -c files.sha'

Storage requirements: 2.8G

Biological Sample:

Drosophila KaiR1D Ligand Binding Domain Glutamate complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ID22 SERCAT, APS, Chicago, Il.

Data Creation Date:

July 27, 2014

Related Datasets:

None


Cite this Dataset

Dharkar, P; Mayer, ML. 2016. "X-Ray Diffraction data for: Drosophila KaiR1D Ligand Binding Domain Glutamate complex. PDB Code 5DTB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/403.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Mark L MayerData Collector, DepositorNIH
Poorva DharkarData CollectorNIH
Mark MayerPINational Institutes of Health

Reprocessing Instructions

Detector rayonix-mx300hs; x beam 149.86, y beam 144.95, distance 178.937, wavelength 1.00000

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/403/39A2b_r1_1.####

Images:

1 - 100

Beam:

(149.87, 145.16) -> (149.87, 145.05)

Distance:

180.0 -> 179.59

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.64 4.45 1.64
Low resolution limit 51.34 51.37 1.67
Completeness 97.3 98.5 95.7
Multiplicity 8.3 7.6 8.2
I/sigma 9.1 23.5 1.1
Rmerge 0.106 0.053 1.878
CC half 0.997 0.994 0.601
Anomalous completeness 98.0 99.8 96.3
Anomalous multiplicity 4.3 4.3 4.3
Cell 87.656 87.656 183.298 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/403/39A2b_r1_1.####

Images:

1 - 100

Beam:

(149.87, 145.16) -> (149.87, 145.0)

Distance:

180.0 -> 179.77

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.63 4.42 1.63
Low resolution limit 38.43 38.44 1.66
Completeness 97.4 98.5 95.8
Multiplicity 8.2 7.4 8.5
I/sigma 11.1 30.2 1.0
Rmerge 0.087 0.042 2.481
CC half 0.995 0.991 0.486
Anomalous completeness 97.9 99.9 96.4
Anomalous multiplicity 4.3 4.3 4.3
Cell 87.87 87.87 183.53 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/403/39A2b_r1_1.####

Images:

1 - 100

Beam:

(149.87, 145.16) -> (149.87, 145.0)

Distance:

180.0 -> 179.74

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.63 4.42 1.63
Low resolution limit 63.47 63.51 1.66
Completeness 97.4 98.4 95.8
Multiplicity 8.2 7.4 8.5
I/sigma 11.1 30.2 1.0
Rmerge 0.087 0.042 2.485
CC half 0.999 0.999 0.491
Anomalous completeness 97.9 99.8 96.4
Anomalous multiplicity 4.3 4.3 4.3
Cell 87.87 87.87 183.53 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/403/39A2b_r1_1.####

Images:

1 - 100

Beam:

(149.87, 145.16) -> (149.87, 145.0)

Distance:

180.0 -> 179.7

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.66 4.51 1.66
Low resolution limit 79.19 79.28 1.69
Completeness 97.6 99.0 96.0
Multiplicity 8.3 7.6 8.4
I/sigma 8.9 21.1 1.0
Rmerge 0.097 0.047 2.118
CC half 0.996 0.993 0.684
Anomalous completeness 98.3 100.0 96.7
Anomalous multiplicity 4.4 4.4 4.4
Cell 87.792 87.792 183.452 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.