Data DOI: 10.15785/SBGRID/402 | ID: 402
Publication DOI: 10.1016/j.neuron.2016.10.058
5EHM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Mayer Laboratory, National Institutes of Health
Release Date: Dec. 13, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/402
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/402 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/402 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/402 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/402 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 402 ; shasum -c files.sha'
Storage requirements: 15G
Biological Sample:
Drosophila KaiR1D Ligand Binding Domain NMDA complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline ID22, SERCAT, APS, Chicago, IL
Data Creation Date:
Oct. 23, 2015
Related Datasets:
None
Dharkar, P; Mayer, ML. 2016. "X-Ray Diffraction data for: Drosophila KaiR1D Ligand Binding Domain NMDA complex. PDB Code 5EHM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/402.
Native Data Set
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Mark L Mayer | Data Collector, Depositor | NIH |
| Poorva Dharkar | Data Collector | NIH |
| Mark Mayer | PI | National Institutes of Health |
Detector: RAYONIX MX300-HS. x beam 150.128, y beam 144.830. Distance 150.197. Wavelength 1.00000. Oscillation range 0.25
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/402/57D6a.####
Images:
1 - 520
Beam:
(149.87, 145.16) -> (149.87, 144.74)
Distance:
150.0 -> 149.96
Spacegroup:
P 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.09 | 2.96 | 1.09 |
| Low resolution limit | 20.5 | 20.51 | 1.11 |
| Completeness | 74.2 | 91.5 | 9.7 |
| Multiplicity | 3.8 | 3.5 | 1.2 |
| I/sigma | 19.7 | 39.8 | 0.6 |
| Rmerge | 0.029 | 0.031 | 0.658 |
| CC half | 0.996 | 0.993 | 0.325 |
| Anomalous completeness | 64.6 | 63.7 | 1.0 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 56.86 | 56.86 | 143.53 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/402/57D6a.####
Images:
1 - 520
Beam:
(149.87, 145.16) -> (149.87, 144.74)
Distance:
150.0 -> 150.16
Spacegroup:
P 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.09 | 2.96 | 1.09 |
| Low resolution limit | 49.24 | 49.29 | 1.11 |
| Completeness | 74.2 | 91.3 | 9.7 |
| Multiplicity | 3.8 | 3.5 | 1.2 |
| I/sigma | 19.7 | 39.8 | 0.6 |
| Rmerge | 0.029 | 0.031 | 0.66 |
| CC half | 0.996 | 0.993 | 0.323 |
| Anomalous completeness | 64.6 | 63.5 | 1.0 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 56.86 | 56.86 | 143.53 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/402/57D6a.####
Images:
1 - 520
Beam:
(149.87, 145.16) -> (149.87, 144.74)
Distance:
150.0 -> 149.95
Spacegroup:
P 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.1 | 2.99 | 1.1 |
| Low resolution limit | 47.81 | 47.86 | 1.12 |
| Completeness | 74.5 | 70.2 | 13.7 |
| Multiplicity | 3.9 | 3.7 | 1.4 |
| I/sigma | 16.7 | 37.6 | 0.7 |
| Rmerge | 0.031 | 0.027 | 0.473 |
| CC half | 0.999 | 0.997 | 0.578 |
| Anomalous completeness | 67.5 | 61.3 | 2.6 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 56.83 | 56.83 | 143.443 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
