Data DOI: 10.15785/SBGRID/402 | ID: 402
Publication DOI: 10.1016/j.neuron.2016.10.058
5EHM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Mayer Laboratory, National Institutes of Health
Release Date: Dec. 13, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/402
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/402 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/402 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/402 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/402 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 402 ; shasum -c files.sha'
Storage requirements: 15G
Biological Sample:
Drosophila KaiR1D Ligand Binding Domain NMDA complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline ID22, SERCAT, APS, Chicago, IL
Data Creation Date:
Oct. 23, 2015
Related Datasets:
None
Dharkar, P; Mayer, ML. 2016. "X-Ray Diffraction data for: Drosophila KaiR1D Ligand Binding Domain NMDA complex. PDB Code 5EHM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/402.
Native Data Set
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Mark L Mayer | Data Collector, Depositor | NIH |
| Poorva Dharkar | Data Collector | NIH |
| Mark Mayer | PI | National Institutes of Health |
Detector: RAYONIX MX300-HS. x beam 150.128, y beam 144.830. Distance 150.197. Wavelength 1.00000. Oscillation range 0.25
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/402/57D6a.####
Images:
1 - 520
Beam:
(149.87, 145.16) -> (149.87, 144.74)
Distance:
150.0 -> 149.95
Spacegroup:
P 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.08 | 2.93 | 1.08 |
| Low resolution limit | 20.5 | 20.51 | 1.1 |
| Completeness | 72.6 | 91.9 | 4.9 |
| Multiplicity | 3.8 | 3.5 | 1.1 |
| I/sigma | 19.5 | 39.4 | 0.5 |
| Rmerge | 0.03 | 0.031 | 0.973 |
| CC half | 0.996 | 0.993 | 0.212 |
| Anomalous completeness | 63.2 | 64.7 | 0.1 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 56.86 | 56.86 | 143.53 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/402/57D6a.####
Images:
1 - 520
Beam:
(149.87, 145.16) -> (149.87, 144.74)
Distance:
150.0 -> 150.16
Spacegroup:
P 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.08 | 2.94 | 1.08 |
| Low resolution limit | 49.24 | 49.29 | 1.1 |
| Completeness | 72.6 | 91.6 | 4.9 |
| Multiplicity | 3.8 | 3.5 | 1.1 |
| I/sigma | 19.6 | 39.4 | 0.5 |
| Rmerge | 0.029 | 0.031 | 0.975 |
| CC half | 0.996 | 0.993 | 0.202 |
| Anomalous completeness | 63.1 | 64.5 | 0.1 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 56.86 | 56.86 | 143.53 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/402/57D6a.####
Images:
1 - 520
Beam:
(149.87, 145.16) -> (149.87, 144.74)
Distance:
150.0 -> 149.93
Spacegroup:
P 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.08 | 2.93 | 1.08 |
| Low resolution limit | 49.22 | 49.27 | 1.1 |
| Completeness | 73.0 | 99.7 | 4.7 |
| Multiplicity | 3.9 | 4.2 | 1.1 |
| I/sigma | 19.4 | 54.5 | 0.3 |
| Rmerge | 0.06 | 0.071 | 0.743 |
| CC half | 0.99 | 0.984 | 0.406 |
| Anomalous completeness | 66.4 | 98.8 | 0.1 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 56.831 | 56.831 | 143.447 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
