X-Ray Diffraction data from Drosophila KaiR1D Ligand Binding Domain NMDA complex, source of 5EHM structure

Data DOI: 10.15785/SBGRID/402 | ID: 402

Publication DOI: 10.1016/j.neuron.2016.10.058

5EHM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Mayer Laboratory, National Institutes of Health

Release Date: Dec. 13, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/402

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/402 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/402 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/402 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/402 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 402 ; shasum -c files.sha'

Storage requirements: 15G

Biological Sample:

Drosophila KaiR1D Ligand Binding Domain NMDA complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline ID22, SERCAT, APS, Chicago, IL

Data Creation Date:

Oct. 23, 2015

Related Datasets:

None


Cite this Dataset

Dharkar, P; Mayer, ML. 2016. "X-Ray Diffraction data for: Drosophila KaiR1D Ligand Binding Domain NMDA complex. PDB Code 5EHM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/402.

Download Citation

Dataset Description

Native Data Set

Project Members

Name Additional Roles Affiliation While Working on the Project
Mark L MayerData Collector, DepositorNIH
Poorva DharkarData CollectorNIH
Mark MayerPINational Institutes of Health

Reprocessing Instructions

Detector: RAYONIX MX300-HS. x beam 150.128, y beam 144.830. Distance 150.197. Wavelength 1.00000. Oscillation range 0.25

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/402/57D6a.####

Images:

1 - 520

Beam:

(149.87, 145.16) -> (149.87, 144.74)

Distance:

150.0 -> 149.96

Spacegroup:

P 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.09 2.96 1.09
Low resolution limit 20.5 20.51 1.11
Completeness 74.2 91.5 9.7
Multiplicity 3.8 3.5 1.2
I/sigma 19.7 39.8 0.6
Rmerge 0.029 0.031 0.658
CC half 0.996 0.993 0.325
Anomalous completeness 64.6 63.7 1.0
Anomalous multiplicity 2.0 2.0 2.0
Cell 56.86 56.86 143.53 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/402/57D6a.####

Images:

1 - 520

Beam:

(149.87, 145.16) -> (149.87, 144.74)

Distance:

150.0 -> 150.16

Spacegroup:

P 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.09 2.96 1.09
Low resolution limit 49.24 49.29 1.11
Completeness 74.2 91.3 9.7
Multiplicity 3.8 3.5 1.2
I/sigma 19.7 39.8 0.6
Rmerge 0.029 0.031 0.66
CC half 0.996 0.993 0.323
Anomalous completeness 64.6 63.5 1.0
Anomalous multiplicity 2.0 2.0 2.0
Cell 56.86 56.86 143.53 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/402/57D6a.####

Images:

1 - 520

Beam:

(149.87, 145.16) -> (149.87, 144.74)

Distance:

150.0 -> 149.95

Spacegroup:

P 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.1 2.99 1.1
Low resolution limit 47.81 47.86 1.12
Completeness 74.5 70.2 13.7
Multiplicity 3.9 3.7 1.4
I/sigma 16.7 37.6 0.7
Rmerge 0.031 0.027 0.473
CC half 0.999 0.997 0.578
Anomalous completeness 67.5 61.3 2.6
Anomalous multiplicity 2.0 2.0 2.0
Cell 56.83 56.83 143.443 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.