X-Ray Diffraction data from integrin alphaVbeta6 head/pro-TGF-beta1 complex, source of 5FFO structure

Data DOI: 10.15785/SBGRID/392 | ID: 392

Publication DOI: 10.1038/nature21035

5FFO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Springer Laboratory, Children's Hospital Boston

Release Date: Dec. 13, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/392

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/392 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/392 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/392 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/392 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 392 ; shasum -c files.sha'

Storage requirements: 5.1G

Biological Sample:

integrin alphaVbeta6 head/pro-TGF-beta1 complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

GM/CA-CAT beamline 23-ID at the Advanced Photon Source

Data Creation Date:

July 27, 2013

Related Datasets:

None


Cite this Dataset

Dong, X; Springer, TA. 2016. "X-Ray Diffraction data for: integrin alphaVbeta6 head/pro-TGF-beta1 complex. PDB Code 5FFO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/392.

Download Citation

Dataset Description

x-ray images

Project Members

Name Additional Roles Affiliation While Working on the Project
Xianchi DongData Collector, DepositorBoston Children's Hospital
Timothy A SpringerBoston Children's Hospital
Timothy SpringerPIChildren's Hospital Boston

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/392/D6_1.####

Images:

1 - 160

Beam:

(149.71, 150.88) -> (149.71, 150.96)

Distance:

400.0 -> 400.12

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 6.37 17.23 6.37
Low resolution limit 75.23 75.23 6.48
Completeness 98.0 95.2 98.5
Multiplicity 3.2 2.9 3.3
I/sigma 16.2 26.2 7.8
Rmerge 0.042 0.032 0.126
CC half 0.997 0.995 0.964
Anomalous completeness 93.8 92.0 93.3
Anomalous multiplicity 1.7 1.7 1.7
Cell 82.103 91.718 131.767 90.0 93.623 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/392/D6_1.####

Images:

1 - 160

Beam:

(149.71, 150.88) -> (149.71, 150.86)

Distance:

400.0 -> 398.27

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 6.19 16.55 6.19
Low resolution limit 45.82 45.82 6.3
Completeness 97.4 94.7 98.3
Multiplicity 3.3 3.0 3.3
I/sigma 22.3 37.9 7.1
Rmerge 0.028 0.02 0.139
CC half 0.998 0.997 0.949
Anomalous completeness 88.8 87.0 92.0
Anomalous multiplicity 1.8 1.8 1.8
Cell 81.85 91.87 131.69 90.0 93.62 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/392/D6_1.####

Images:

1 - 160

Beam:

(149.71, 150.88) -> (149.71, 150.86)

Distance:

400.0 -> 400.39

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 6.1 16.5 6.1
Low resolution limit 75.29 75.29 6.21
Completeness 97.5 93.8 99.1
Multiplicity 3.3 3.0 3.4
I/sigma 21.7 37.5 7.4
Rmerge 0.029 0.021 0.139
CC half 0.942 0.821 0.966
Anomalous completeness 88.9 85.6 93.1
Anomalous multiplicity 1.8 1.8 1.8
Cell 81.83 91.86 131.66 90.0 93.62 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/392/D6_1.####

Images:

1 - 160

Beam:

(149.71, 150.88) -> (149.71, 150.95)

Distance:

400.0 -> 399.17

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 6.99 18.88 6.99
Low resolution limit 74.95 74.95 7.11
Completeness 97.2 95.4 88.5
Multiplicity 3.4 3.0 3.5
I/sigma 19.0 23.7 12.0
Rmerge 0.036 0.034 0.074
CC half 0.997 0.995 0.982
Anomalous completeness 94.2 90.7 85.3
Anomalous multiplicity 1.8 1.8 1.8
Cell 81.399 91.45 131.059 90.0 93.687 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.