Data DOI: 10.15785/SBGRID/392 | ID: 392
Publication DOI: 10.1038/nature21035
5FFO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Springer Laboratory, Children's Hospital Boston
Release Date: Dec. 13, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/392
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/392 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/392 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/392 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/392 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 392 ; shasum -c files.sha'
Storage requirements: 5.1G
Biological Sample:
integrin alphaVbeta6 head/pro-TGF-beta1 complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
GM/CA-CAT beamline 23-ID at the Advanced Photon Source
Data Creation Date:
July 27, 2013
Related Datasets:
None
Dong, X; Springer, TA. 2016. "X-Ray Diffraction data for: integrin alphaVbeta6 head/pro-TGF-beta1 complex. PDB Code 5FFO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/392.
x-ray images
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Xianchi Dong | Data Collector, Depositor | Boston Children's Hospital |
| Timothy A Springer | Boston Children's Hospital | |
| Timothy Springer | PI | Children's Hospital Boston |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/392/D6_1.####
Images:
1 - 160
Beam:
(149.71, 150.88) -> (149.71, 150.96)
Distance:
400.0 -> 400.12
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 6.37 | 17.23 | 6.37 |
| Low resolution limit | 75.23 | 75.23 | 6.48 |
| Completeness | 98.0 | 95.2 | 98.5 |
| Multiplicity | 3.2 | 2.9 | 3.3 |
| I/sigma | 16.2 | 26.2 | 7.8 |
| Rmerge | 0.042 | 0.032 | 0.126 |
| CC half | 0.997 | 0.995 | 0.964 |
| Anomalous completeness | 93.8 | 92.0 | 93.3 |
| Anomalous multiplicity | 1.7 | 1.7 | 1.7 |
| Cell | 82.103 | 91.718 | 131.767 | 90.0 | 93.623 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/392/D6_1.####
Images:
1 - 160
Beam:
(149.71, 150.88) -> (149.71, 150.86)
Distance:
400.0 -> 398.27
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 6.19 | 16.55 | 6.19 |
| Low resolution limit | 45.82 | 45.82 | 6.3 |
| Completeness | 97.4 | 94.7 | 98.3 |
| Multiplicity | 3.3 | 3.0 | 3.3 |
| I/sigma | 22.3 | 37.9 | 7.1 |
| Rmerge | 0.028 | 0.02 | 0.139 |
| CC half | 0.998 | 0.997 | 0.949 |
| Anomalous completeness | 88.8 | 87.0 | 92.0 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 81.85 | 91.87 | 131.69 | 90.0 | 93.62 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/392/D6_1.####
Images:
1 - 160
Beam:
(149.71, 150.88) -> (149.71, 150.86)
Distance:
400.0 -> 400.39
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 6.1 | 16.5 | 6.1 |
| Low resolution limit | 75.29 | 75.29 | 6.21 |
| Completeness | 97.5 | 93.8 | 99.1 |
| Multiplicity | 3.3 | 3.0 | 3.4 |
| I/sigma | 21.7 | 37.5 | 7.4 |
| Rmerge | 0.029 | 0.021 | 0.139 |
| CC half | 0.942 | 0.821 | 0.966 |
| Anomalous completeness | 88.9 | 85.6 | 93.1 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 81.83 | 91.86 | 131.66 | 90.0 | 93.62 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/392/D6_1.####
Images:
1 - 160
Beam:
(149.71, 150.88) -> (149.71, 150.95)
Distance:
400.0 -> 399.17
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 6.99 | 18.88 | 6.99 |
| Low resolution limit | 74.95 | 74.95 | 7.11 |
| Completeness | 97.2 | 95.4 | 88.5 |
| Multiplicity | 3.4 | 3.0 | 3.5 |
| I/sigma | 19.0 | 23.7 | 12.0 |
| Rmerge | 0.036 | 0.034 | 0.074 |
| CC half | 0.997 | 0.995 | 0.982 |
| Anomalous completeness | 94.2 | 90.7 | 85.3 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 81.399 | 91.45 | 131.059 | 90.0 | 93.687 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
