Data DOI: 10.15785/SBGRID/392 | ID: 392
Publication DOI: 10.1038/nature21035
5FFO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Springer Laboratory, Children's Hospital Boston
Release Date: Dec. 13, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/392
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/392 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/392 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/392 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/392 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 392 ; shasum -c files.sha'
Storage requirements: 5.1G
Biological Sample:
integrin alphaVbeta6 head/pro-TGF-beta1 complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
GM/CA-CAT beamline 23-ID at the Advanced Photon Source
Data Creation Date:
July 27, 2013
Related Datasets:
None
Dong, X; Springer, TA. 2016. "X-Ray Diffraction data for: integrin alphaVbeta6 head/pro-TGF-beta1 complex. PDB Code 5FFO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/392.
x-ray images
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Xianchi Dong | Data Collector, Depositor | Boston Children's Hospital |
| Timothy A Springer | Boston Children's Hospital | |
| Timothy Springer | PI | Children's Hospital Boston |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/392/D6_1.####
Images:
1 - 160
Beam:
(149.71, 150.88) -> (149.71, 150.86)
Distance:
400.0 -> 396.97
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 4.13 | 11.16 | 4.13 |
| Low resolution limit | 45.93 | 45.93 | 4.2 |
| Completeness | 98.7 | 96.0 | 99.5 |
| Multiplicity | 3.3 | 3.2 | 3.4 |
| I/sigma | 9.4 | 37.8 | 1.0 |
| Rmerge | 0.062 | 0.02 | 1.06 |
| CC half | 0.997 | 0.998 | 0.319 |
| Anomalous completeness | 91.8 | 87.4 | 95.6 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 81.84 | 91.86 | 131.67 | 90.0 | 93.62 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/392/D6_1.####
Images:
1 - 160
Beam:
(149.71, 150.88) -> (149.71, 150.86)
Distance:
400.0 -> 400.51
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 4.12 | 11.17 | 4.12 |
| Low resolution limit | 71.44 | 71.45 | 4.19 |
| Completeness | 98.7 | 95.6 | 99.5 |
| Multiplicity | 3.4 | 3.2 | 3.4 |
| I/sigma | 9.4 | 38.2 | 1.0 |
| Rmerge | 0.061 | 0.02 | 1.097 |
| CC half | 0.95 | 0.9 | 0.274 |
| Anomalous completeness | 92.3 | 88.4 | 95.2 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 81.86 | 91.88 | 131.7 | 90.0 | 93.62 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/392/D6_1.####
Images:
1 - 160
Beam:
(149.71, 150.88) -> (149.71, 150.94)
Distance:
400.0 -> 398.72
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 4.19 | 11.37 | 4.19 |
| Low resolution limit | 130.94 | 131.0 | 4.26 |
| Completeness | 99.0 | 97.2 | 99.3 |
| Multiplicity | 3.5 | 3.3 | 3.5 |
| I/sigma | 12.3 | 65.5 | 1.1 |
| Rmerge | 0.095 | 0.078 | 0.771 |
| CC half | 0.781 | 0.6 | 0.542 |
| Anomalous completeness | 96.4 | 95.9 | 97.1 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 81.533 | 91.549 | 131.208 | 90.0 | 93.667 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
