X-Ray Diffraction data from Putative PIN domain (VapC4 toxin), source of 5H4H structure

Data DOI: 10.15785/SBGRID/390 | ID: 390

5H4H Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Murthy Laboratory, Indian Institute of Science

Release Date: Nov. 25, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/390

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/390 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/390 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/390 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/390 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 390 ; shasum -c files.sha'

Storage requirements: 1.1G

Biological Sample:

Putative PIN domain (VapC4 toxin)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF BM14

Data Creation Date:

Jan. 10, 2011

Related Datasets:

None


Cite this Dataset

Hatti, K; Biswas, A; k, S; Murthy, M. 2016. "X-Ray Diffraction data for: Putative PIN domain (VapC4 toxin). PDB Code 5H4H", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/390.

Download Citation

Dataset Description

Native VapC4 dataset at 2.2A

Project Members

Name Additional Roles Affiliation While Working on the Project
Kaushik HattiDepositorMBU, IISc
Ansuman BiswasData CollectorCDC, IISc
Sekar kCDS, IISc
M.R.N. MurthyPIIndian Institute of Science

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/390/hypo_adtv36_soak1_###.mar2300

Images:

1 - 328

Beam:

(172.5, 172.5) -> (172.5, 172.22)

Distance:

200.0 -> 200.07

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.23 6.05 2.23
Low resolution limit 33.64 33.64 2.27
Completeness 99.8 100.0 95.2
Multiplicity 3.3 3.2 3.0
I/sigma 8.3 21.7 2.4
Rmerge 0.1 0.031 0.415
CC half 0.992 0.998 0.548
Anomalous completeness 95.9 100.0 83.0
Anomalous multiplicity 1.7 1.7 1.7
Cell 51.957 45.29 53.672 90.0 104.786 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/390/hypo_adtv36_soak1_###.mar2300

Images:

1 - 328

Beam:

(172.5, 172.5) -> (172.5, 173.07)

Distance:

200.0 -> 199.63

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.22 5.98 2.22
Low resolution limit 20.96 20.96 2.26
Completeness 98.3 100.0 90.1
Multiplicity 3.3 3.2 2.9
I/sigma 9.2 25.6 2.1
Rmerge 0.084 0.027 0.465
CC half 0.995 0.997 0.674
Anomalous completeness 93.7 96.0 73.6
Anomalous multiplicity 1.8 1.8 1.8
Cell 51.86 45.2 53.57 90.0 104.69 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/390/hypo_adtv36_soak1_###.mar2300

Images:

1 - 328

Beam:

(172.5, 172.5) -> (172.5, 173.09)

Distance:

200.0 -> 199.68

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.22 5.99 2.22
Low resolution limit 22.48 22.48 2.26
Completeness 98.7 100.0 90.3
Multiplicity 3.3 3.2 2.9
I/sigma 9.1 25.4 2.1
Rmerge 0.085 0.027 0.457
CC half 0.996 0.997 0.678
Anomalous completeness 94.1 96.4 73.8
Anomalous multiplicity 1.8 1.8 1.8
Cell 51.86 45.2 53.57 90.0 104.69 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/390/hypo_adtv36_soak1_###.mar2300

Images:

1 - 328

Beam:

(172.5, 172.5) -> (172.5, 173.07)

Distance:

200.0 -> 199.47

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.21 6.0 2.21
Low resolution limit 32.19 32.19 2.25
Completeness 99.2 100.0 83.5
Multiplicity 3.3 3.3 2.8
I/sigma 8.3 19.1 2.1
Rmerge 0.09 0.03 0.407
CC half 0.994 0.998 0.708
Anomalous completeness 96.6 100.0 65.9
Anomalous multiplicity 1.8 1.8 1.8
Cell 51.87 45.226 53.582 90.0 104.725 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.