X-Ray Diffraction data from Bacillus anthracis Prolyl 4-hydroxylase in complex with Co(II) and malonate, source of 5IAV structure

Data DOI: 10.15785/SBGRID/385 | ID: 385

Publication DOI: 10.1074/jbc.M116.725432

5IAV Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Dey Laboratory, University of Iowa

Release Date: Nov. 11, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/385

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/385 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/385 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/385 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/385 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 385 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

Bacillus anthracis Prolyl 4-hydroxylase in complex with Co(II) and malonate

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, SBC-CAT, APS

Data Creation Date:

Nov. 16, 2014

Related Datasets:

None


Cite this Dataset

Schnicker, NJ; Dey, M. 2016. "X-Ray Diffraction data for: Bacillus anthracis Prolyl 4-hydroxylase in complex with Co(II) and malonate. PDB Code 5IAV", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/385.

Download Citation

Dataset Description

Native dataset, Co(II) bound and malonate

Project Members

Name Additional Roles Affiliation While Working on the Project
Nicholas J SchnickerData Collector, DepositorUniversity of Iowa
Mishtu Dey, PIUniversity of Iowa

Reprocessing Instructions

Processed with XDS

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/385/n5_5.####.img

Images:

1 - 360

Beam:

(154.5, 159.98) -> (154.5, 162.25)

Distance:

181.7 -> 181.75

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.45 3.93 1.45
Low resolution limit 28.11 28.12 1.48
Completeness 99.6 97.7 99.9
Multiplicity 3.6 3.5 3.7
I/sigma 15.5 42.4 1.2
Rmerge 0.029 0.02 0.95
CC half 0.999 0.998 0.462
Anomalous completeness 96.5 90.6 99.0
Anomalous multiplicity 1.9 1.9 1.9
Cell 42.79 41.52 111.11 90.0 96.67 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/385/n5_5.####.img

Images:

1 - 360

Beam:

(154.5, 159.98) -> (154.5, 162.26)

Distance:

181.7 -> 181.92

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.46 3.96 1.46
Low resolution limit 41.3 41.32 1.49
Completeness 99.5 97.4 99.8
Multiplicity 3.6 3.5 3.7
I/sigma 15.8 42.3 1.2
Rmerge 0.029 0.02 0.893
CC half 0.999 0.998 0.509
Anomalous completeness 96.4 90.2 99.2
Anomalous multiplicity 1.9 1.9 1.9
Cell 42.79 41.52 111.11 90.0 96.67 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/385/n5_5.####.img

Images:

1 - 360

Beam:

(154.5, 159.98) -> (154.5, 162.26)

Distance:

181.7 -> 181.89

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.51 4.1 1.51
Low resolution limit 55.16 55.2 1.54
Completeness 97.6 100.0 82.2
Multiplicity 3.2 3.6 1.8
I/sigma 10.6 21.5 1.2
Rmerge 0.032 0.03 0.44
CC half 0.998 0.996 0.754
Anomalous completeness 87.4 100.0 38.2
Anomalous multiplicity 1.7 1.7 1.7
Cell 42.774 41.516 111.079 90.0 96.678 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.