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X-Ray Diffraction data from Bacillus anthracis Prolyl 4-hydroxylase - apo form, source of 5IAT structure

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Data DOI: 10.15785/SBGRID/384 | ID: 384

Publication DOI: 10.1074/jbc.M116.725432

5IAT Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Dey Laboratory, University of Iowa

Release Date: 11 Nov 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/384

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/384 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/384 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/384 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/384 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 384 ; shasum -c files.sha'

Storage requirements: 2.9G

Biological Sample:

Bacillus anthracis Prolyl 4-hydroxylase - apo form

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

4.2.2, ALS

Data Creation Date:

21 Jun 2013

Related Datasets:

None


Cite this Dataset

Schnicker, NJ; Dey, M. 2016. "X-Ray Diffraction data for: Bacillus anthracis Prolyl 4-hydroxylase - apo form. PDB Code 5IAT", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/384.

Download Citation

Dataset Description

Native dataset, no metal bound

Project Members

Name Additional Roles Affiliation While Working on the Project
Nicholas J SchnickerData Collector, DepositorUniversity of Iowa
Mishtu Dey, PIUniversity of Iowa

Reprocessing Instructions

Processed with XDS

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d mosflm_beam_centre=67.259,85.040 /programs/datagrid//384/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/384/2_8_bap_1_###.img

Images:

1 - 360

Beam:

(67.26, 85.04) -> (67.26, 84.21)

Distance:

-120.0 -> -115.77

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.3 3.54 1.3
Low resolution limit 26.32 26.32 1.33
Completeness 37.3 97.8 0.4
Multiplicity 1.2 1.7 1.0
I/sigma 0.1 0.2 0.0
Rmerge 1.375 1.25 0.0
CC half -0.003 -0.004 0.0
Anomalous completeness 6.2 67.6 0.0
Anomalous multiplicity 1.0 1.0 1.0
Cell 91.92 125.574 142.61 102.487 107.1 105.227
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii mosflm_beam_centre=67.259,85.040 /programs/datagrid//384/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials mosflm_beam_centre=67.259,85.040 /programs/datagrid//384/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.