X-Ray Diffraction data from Bacillus anthracis Prolyl 4-hydroxylase in complex with Cd(II) and AKG, source of 5HV0 structure

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Data DOI: 10.15785/SBGRID/382 | ID: 382

Publication DOI: 10.1107/S2059798316004198

5HV0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Dey Laboratory, University of Iowa

Release Date: Nov. 8, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/382

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/382 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/382 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/382 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/382 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 382 ; shasum -c files.sha'

Storage requirements: 14G

Biological Sample:

Bacillus anthracis Prolyl 4-hydroxylase in complex with Cd(II) and AKG

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

4.2.2, ALS

Data Creation Date:

Aug. 21, 2014

Related Datasets:

None


Cite this Dataset

Schnicker, NJ; Dey, M. 2016. "X-Ray Diffraction data for: Bacillus anthracis Prolyl 4-hydroxylase in complex with Cd(II) and AKG. PDB Code 5HV0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/382.

Download Citation

Dataset Description

High resolution dataset with Cd(II) in space group P3

Project Members

Name Additional Roles Affiliation While Working on the Project
Nicholas J SchnickerData Collector, DepositorUniversity of Iowa
Mishtu Dey, PIUniversity of Iowa

Reprocessing Instructions

This dataset was indexed in space group P3 processed with XDS at 1.63 A resolution.

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=2d mosflm_beam_centre=146.95,151.04 /programs/datagrid//382/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.00007

Sweep:

SWEEP1

Files:

/programs/datagrid/382/3-01_1_####.img

Images:

1 - 900

Beam:

(146.95, 151.04) -> (146.95, 146.8)

Distance:

-200.0 -> 199.8

Spacegroup:

P 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.55 4.21 1.55
Low resolution limit 39.14 39.16 1.58
Completeness 99.5 99.5 93.7
Multiplicity 5.3 5.7 3.1
I/sigma 9.4 22.6 1.4
Rmerge 0.089 0.057 0.654
CC half 0.996 0.994 0.337
Anomalous completeness 97.0 99.1 73.3
Anomalous multiplicity 2.7 2.7 2.7
Cell 90.401 90.401 51.461 90.0 90.0 120.0
/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3d mosflm_beam_centre=146.95,151.04 /programs/datagrid//382/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3dii mosflm_beam_centre=146.95,151.04 /programs/datagrid//382/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=dials mosflm_beam_centre=146.95,151.04 /programs/datagrid//382/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.