X-Ray Diffraction data from Mouse Protocadherin Gamma B2 extracellular cadherin domains 3-6, source of 5SZR structure

Data DOI: 10.15785/SBGRID/380 | ID: 380

Publication DOI: 10.7554/eLife.20930

5SZR Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Nov. 1, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/380

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/380 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/380 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/380 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/380 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 380 ; shasum -c files.sha'

Storage requirements: 1.5G

Biological Sample:

Mouse Protocadherin Gamma B2 extracellular cadherin domains 3-6

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

June 29, 2016

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin Gamma B2 extracellular cadherin domains 3-6. PDB Code 5SZR", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/380.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/380/gB2ec36KG242_1_1_####.cbf

Images:

1 - 250

Beam:

(216.33, 222.38) -> (216.33, 222.33)

Distance:

450.0 -> 452.06

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.32 6.3 2.32
Low resolution limit 89.96 90.03 2.36
Completeness 99.3 97.6 99.2
Multiplicity 5.4 5.1 5.6
I/sigma 7.6 21.3 1.1
Rmerge 0.094 0.039 1.699
CC half 0.999 0.999 0.851
Anomalous completeness 97.7 96.4 98.2
Anomalous multiplicity 2.9 2.9 2.9
Cell 104.66 104.66 352.05 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/380/gB2ec36KG242_1_1_####.cbf

Images:

1 - 250

Beam:

(216.33, 222.38) -> (216.33, 222.34)

Distance:

450.0 -> 451.48

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.3 6.24 2.3
Low resolution limit 100.32 100.42 2.34
Completeness 99.3 97.5 99.4
Multiplicity 5.4 5.1 5.6
I/sigma 7.4 21.1 1.0
Rmerge 0.096 0.04 1.787
CC half 0.998 0.998 0.872
Anomalous completeness 97.7 96.4 98.4
Anomalous multiplicity 2.9 2.9 2.9
Cell 104.66 104.66 352.05 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/380/gB2ec36KG242_1_1_####.cbf

Images:

1 - 250

Beam:

(216.33, 222.38) -> (216.33, 222.34)

Distance:

450.0 -> 451.25

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.34 6.35 2.34
Low resolution limit 100.35 100.44 2.38
Completeness 99.5 97.4 99.7
Multiplicity 5.1 5.0 5.3
I/sigma 5.0 10.9 1.2
Rmerge 0.103 0.053 0.818
CC half 0.996 0.998 0.963
Anomalous completeness 98.6 98.3 98.8
Anomalous multiplicity 2.7 2.7 2.7
Cell 104.686 104.686 352.214 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.