X-Ray Diffraction data from Mouse Protocadherin gamma A4 extracellular cadherin domains 3-6, source of 5SZQ structure

Data DOI: 10.15785/SBGRID/379 | ID: 379

Publication DOI: 10.7554/eLife.20930

5SZQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Nov. 1, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/379

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/379 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/379 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/379 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/379 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 379 ; shasum -c files.sha'

Storage requirements: 2.4G

Biological Sample:

Mouse Protocadherin gamma A4 extracellular cadherin domains 3-6

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

June 29, 2016

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin gamma A4 extracellular cadherin domains 3-6. PDB Code 5SZQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/379.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

Anisotropic limits of 3.0/4.5/2.56 angstroms were applied along a*/b*/c* respectively.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/379/g4ec36SH009_2a_1_####.cbf

Images:

1 - 400

Beam:

(216.28, 222.35) -> (216.28, 222.31)

Distance:

550.0 -> 551.07

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.59 7.03 2.59
Low resolution limit 59.74 59.76 2.63
Completeness 99.7 100.0 99.0
Multiplicity 4.2 3.6 3.8
I/sigma 6.1 25.3 0.3
Rmerge 0.087 0.032 2.982
CC half 0.998 0.998 0.292
Anomalous completeness 96.9 94.2 93.9
Anomalous multiplicity 2.3 2.3 2.3
Cell 31.89 63.7 344.37 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/379/g4ec36SH009_2a_1_####.cbf

Images:

1 - 400

Beam:

(216.28, 222.35) -> (216.28, 222.3)

Distance:

550.0 -> 551.14

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.59 7.03 2.59
Low resolution limit 86.09 86.14 2.63
Completeness 99.7 100.0 99.0
Multiplicity 4.2 3.6 3.8
I/sigma 6.1 25.1 0.3
Rmerge 0.087 0.033 3.052
CC half 0.997 0.997 0.301
Anomalous completeness 96.9 94.5 93.8
Anomalous multiplicity 2.3 2.3 2.3
Cell 31.89 63.7 344.36 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/379/g4ec36SH009_2a_1_####.cbf

Images:

1 - 400

Beam:

(216.28, 222.35) -> (216.28, 222.29)

Distance:

550.0 -> 552.76

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.58 6.99 2.58
Low resolution limit 263.31 264.7 2.62
Completeness 96.5 94.6 89.9
Multiplicity 2.3 2.2 2.0
I/sigma 2.1 21.3 0.0
Rmerge 0.191 0.15 1.883
CC half 0.952 0.937 0.473
Anomalous completeness 77.9 80.7 58.0
Anomalous multiplicity 1.3 1.3 1.3
Cell 527.123 63.885 32.004 90.0 92.498 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.