Data DOI: 10.15785/SBGRID/379 | ID: 379
Publication DOI: 10.7554/eLife.20930
5SZQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: 1 Nov 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/379
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/379 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/379 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/379 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/379 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 379 ; shasum -c files.sha'
Storage requirements: 2.4G
Biological Sample:
Mouse Protocadherin gamma A4 extracellular cadherin domains 3-6
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-C
Data Creation Date:
29 Jun 2016
Related Datasets:
None
Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin gamma A4 extracellular cadherin domains 3-6. PDB Code 5SZQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/379.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
Anisotropic limits of 3.0/4.5/2.56 angstroms were applied along a*/b*/c* respectively.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/379/g4ec36SH009_2a_1_####.cbf
Images:
1 - 400
Beam:
(216.28, 222.35) -> (216.28, 222.31)
Distance:
550.0 -> 551.07
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.59 | 7.03 | 2.59 |
| Low resolution limit | 59.74 | 59.76 | 2.63 |
| Completeness | 99.7 | 100.0 | 99.0 |
| Multiplicity | 4.2 | 3.6 | 3.8 |
| I/sigma | 6.1 | 25.3 | 0.3 |
| Rmerge | 0.087 | 0.032 | 2.982 |
| CC half | 0.998 | 0.998 | 0.292 |
| Anomalous completeness | 96.9 | 94.2 | 93.9 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 31.89 | 63.7 | 344.37 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/379/g4ec36SH009_2a_1_####.cbf
Images:
1 - 400
Beam:
(216.28, 222.35) -> (216.28, 222.3)
Distance:
550.0 -> 551.14
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.59 | 7.03 | 2.59 |
| Low resolution limit | 86.09 | 86.14 | 2.63 |
| Completeness | 99.7 | 100.0 | 99.0 |
| Multiplicity | 4.2 | 3.6 | 3.8 |
| I/sigma | 6.1 | 25.1 | 0.3 |
| Rmerge | 0.087 | 0.033 | 3.052 |
| CC half | 0.997 | 0.997 | 0.301 |
| Anomalous completeness | 96.9 | 94.5 | 93.8 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 31.89 | 63.7 | 344.36 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/379/g4ec36SH009_2a_1_####.cbf
Images:
1 - 400
Beam:
(216.28, 222.35) -> (216.28, 222.29)
Distance:
550.0 -> 552.76
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.58 | 6.99 | 2.58 |
| Low resolution limit | 263.31 | 264.7 | 2.62 |
| Completeness | 96.5 | 94.6 | 89.9 |
| Multiplicity | 2.3 | 2.2 | 2.0 |
| I/sigma | 2.1 | 21.3 | 0.0 |
| Rmerge | 0.191 | 0.15 | 1.883 |
| CC half | 0.952 | 0.937 | 0.473 |
| Anomalous completeness | 77.9 | 80.7 | 58.0 |
| Anomalous multiplicity | 1.3 | 1.3 | 1.3 |
| Cell | 527.123 | 63.885 | 32.004 | 90.0 | 92.498 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
