X-Ray Diffraction data from Mouse Protocadherin Gamma B7 extracellular cadherin domains 1-4 P21 crystal form, source of 5SZP structure

Data DOI: 10.15785/SBGRID/378 | ID: 378

Publication DOI: 10.7554/eLife.20930

5SZP Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Nov. 1, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/378

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/378 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/378 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/378 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/378 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 378 ; shasum -c files.sha'

Storage requirements: 3.5G

Biological Sample:

Mouse Protocadherin Gamma B7 extracellular cadherin domains 1-4 P21 crystal form

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

July 22, 2016

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin Gamma B7 extracellular cadherin domains 1-4 P21 crystal form. PDB Code 5SZP", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/378.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/378/gB7SH002_12_1_####.cbf

Images:

1 - 600

Beam:

(216.28, 222.34) -> (216.28, 222.48)

Distance:

580.0 -> 577.8

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.21 8.71 3.21
Low resolution limit 125.73 125.83 3.27
Completeness 95.3 95.6 93.3
Multiplicity 2.7 2.5 2.5
I/sigma 3.4 6.8 1.0
Rmerge 0.175 0.085 0.817
CC half 0.972 0.98 0.691
Anomalous completeness 77.2 76.9 73.3
Anomalous multiplicity 1.5 1.5 1.5
Cell 83.658 45.68 126.569 90.0 96.6 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/378/gB7SH002_12_1_####.cbf

Images:

1 - 600

Beam:

(216.28, 222.34) -> (216.28, 222.31)

Distance:

580.0 -> 578.68

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.96 13.37 4.96
Low resolution limit 47.85 47.86 5.05
Completeness 96.5 94.9 95.3
Multiplicity 3.1 2.8 3.0
I/sigma 15.4 23.1 10.8
Rmerge 0.042 0.032 0.074
CC half 0.996 0.995 0.982
Anomalous completeness 82.2 80.5 76.7
Anomalous multiplicity 1.8 1.8 1.8
Cell 84.29 45.8 127.87 90.0 96.95 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/378/gB7SH002_12_1_####.cbf

Images:

1 - 600

Beam:

(216.28, 222.34) -> (216.28, 222.32)

Distance:

580.0 -> 577.88

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.36 9.12 3.36
Low resolution limit 73.95 73.96 3.42
Completeness 96.4 96.1 97.1
Multiplicity 3.2 3.0 3.4
I/sigma 7.8 20.1 1.0
Rmerge 0.084 0.032 0.967
CC half 0.995 0.996 0.614
Anomalous completeness 81.7 87.5 90.1
Anomalous multiplicity 1.8 1.8 1.8
Cell 84.12 45.71 127.58 90.0 96.95 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/378/gB7SH002_12_1_####.cbf

Images:

1 - 600

Beam:

(216.28, 222.34) -> (216.28, 222.33)

Distance:

580.0 -> 578.68

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.88 7.8 2.88
Low resolution limit 73.72 73.74 2.93
Completeness 98.2 98.6 86.5
Multiplicity 3.2 3.1 3.3
I/sigma 3.7 8.3 0.9
Rmerge 0.261 0.08 1.31
CC half 0.936 0.984 0.512
Anomalous completeness 90.5 93.6 79.4
Anomalous multiplicity 1.7 1.7 1.7
Cell 83.908 45.569 127.077 90.0 96.929 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.