Data DOI: 10.15785/SBGRID/378 | ID: 378
Publication DOI: 10.7554/eLife.20930
5SZP Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: 1 Nov 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/378
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/378 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/378 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/378 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/378 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 378 ; shasum -c files.sha'
Storage requirements: 3.5G
Biological Sample:
Mouse Protocadherin Gamma B7 extracellular cadherin domains 1-4 P21 crystal form
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-C
Data Creation Date:
22 Jul 2016
Related Datasets:
None
Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin Gamma B7 extracellular cadherin domains 1-4 P21 crystal form. PDB Code 5SZP", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/378.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/378/gB7SH002_12_1_####.cbf
Images:
1 - 600
Beam:
(216.28, 222.34) -> (216.28, 222.32)
Distance:
580.0 -> 579.5
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.13 | 8.49 | 3.13 |
| Low resolution limit | 83.59 | 83.62 | 3.18 |
| Completeness | 97.6 | 96.8 | 98.2 |
| Multiplicity | 3.2 | 3.1 | 3.2 |
| I/sigma | 6.6 | 21.1 | 0.4 |
| Rmerge | 0.102 | 0.032 | 3.434 |
| CC half | 0.995 | 0.996 | 0.286 |
| Anomalous completeness | 84.6 | 88.3 | 88.2 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 84.21 | 45.76 | 127.72 | 90.0 | 96.95 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/378/gB7SH002_12_1_####.cbf
Images:
1 - 600
Beam:
(216.28, 222.34) -> (216.28, 222.33)
Distance:
580.0 -> 578.13
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.83 | 7.67 | 2.83 |
| Low resolution limit | 83.6 | 83.63 | 2.87 |
| Completeness | 97.5 | 97.9 | 91.5 |
| Multiplicity | 3.2 | 3.2 | 3.4 |
| I/sigma | 4.4 | 29.4 | 1.0 |
| Rmerge | 0.183 | 0.047 | 1.221 |
| CC half | 0.978 | 0.994 | 0.337 |
| Anomalous completeness | 89.7 | 94.5 | 87.2 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 84.221 | 45.729 | 127.573 | 90.0 | 96.985 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
