X-Ray Diffraction data from Mouse Protocadherin Gamma B7 extracellular cadherin domains 1-4 P41212 crystal form, source of 5SZO structure

Data DOI: 10.15785/SBGRID/377 | ID: 377

Publication DOI: 10.7554/eLife.20930

5SZO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Nov. 1, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/377

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/377 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/377 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/377 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/377 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 377 ; shasum -c files.sha'

Storage requirements: 5.3G

Biological Sample:

Mouse Protocadherin Gamma B7 extracellular cadherin domains 1-4 P41212 crystal form

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

Oct. 25, 2015

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin Gamma B7 extracellular cadherin domains 1-4 P41212 crystal form. PDB Code 5SZO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/377.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

Anisotropic limits of 4.5/4.5/3.6 angstroms along a*/b*/c* were applied.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP1

Files:

/programs/datagrid/377/gB7SH014_6_1_####.cbf

Images:

1 - 900

Beam:

(216.65, 222.62) -> (216.65, 222.6)

Distance:

600.0 -> 598.17

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.43 9.31 3.43
Low resolution limit 97.07 97.11 3.49
Completeness 100.0 100.0 100.0
Multiplicity 10.5 9.4 11.2
I/sigma 4.9 16.0 1.0
Rmerge 0.29 0.112 2.871
CC half 0.987 0.986 0.764
Anomalous completeness 100.0 99.4 100.0
Anomalous multiplicity 5.8 5.8 5.8
Cell 97.072 97.072 310.612 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP1

Files:

/programs/datagrid/377/gB7SH014_6_1_####.cbf

Images:

1 - 900

Beam:

(216.65, 222.62) -> (216.65, 222.48)

Distance:

600.0 -> 594.82

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 5.39 14.61 5.39
Low resolution limit 97.13 97.15 5.48
Completeness 100.0 100.0 100.0
Multiplicity 12.0 8.9 11.3
I/sigma 19.3 37.6 9.1
Rmerge 0.066 0.04 0.227
CC half 0.999 0.999 0.995
Anomalous completeness 99.5 98.7 100.0
Anomalous multiplicity 6.9 6.9 6.9
Cell 97.13 97.13 312.25 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP1

Files:

/programs/datagrid/377/gB7SH014_6_1_####.cbf

Images:

1 - 900

Beam:

(216.65, 222.62) -> (216.65, 222.47)

Distance:

600.0 -> 597.85

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.96 13.44 4.96
Low resolution limit 71.01 71.02 5.05
Completeness 100.0 100.0 99.4
Multiplicity 12.0 9.0 12.7
I/sigma 16.9 36.8 7.4
Rmerge 0.074 0.041 0.311
CC half 0.999 0.999 0.996
Anomalous completeness 99.6 99.0 99.0
Anomalous multiplicity 6.8 6.8 6.8
Cell 97.13 97.13 312.26 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9793

Sweep:

SWEEP1

Files:

/programs/datagrid/377/gB7SH014_6_1_####.cbf

Images:

1 - 900

Beam:

(216.65, 222.62) -> (216.65, 222.48)

Distance:

600.0 -> 601.04

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 5.21 14.14 5.21
Low resolution limit 97.66 97.67 5.3
Completeness 97.9 95.9 93.7
Multiplicity 3.3 3.1 3.1
I/sigma 1.7 3.0 1.0
Rmerge 0.256 0.134 0.365
CC half 0.947 0.984 0.888
Anomalous completeness 91.9 91.5 84.7
Anomalous multiplicity 1.8 1.8 1.8
Cell 97.888 97.657 316.899 90.0 91.359 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.