X-Ray Diffraction data from Mouse Protocadherin gamma A9 extracellular cadherin domains 1-5, source of 5SZN structure

Data DOI: 10.15785/SBGRID/376 | ID: 376

Publication DOI: 10.7554/eLife.20930

5SZN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Nov. 1, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/376

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/376 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/376 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/376 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/376 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 376 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

Mouse Protocadherin gamma A9 extracellular cadherin domains 1-5

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

June 26, 2015

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin gamma A9 extracellular cadherin domains 1-5. PDB Code 5SZN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/376.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

Anisotropic limits of 2.94/4.3/3.2 angstroms along a*/b*/c* were applied.

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97924

Sweep:

SWEEP1

Files:

/programs/datagrid/376/gA9KG206_4_1_###.img

Images:

1 - 180

Beam:

(150.65, 158.8) -> (150.65, 158.9)

Distance:

400.0 -> 397.84

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.87 10.46 3.87
Low resolution limit 44.66 44.67 3.94
Completeness 98.1 94.0 98.5
Multiplicity 3.6 3.5 3.7
I/sigma 9.6 23.5 4.6
Rmerge 0.072 0.032 0.227
CC half 0.996 0.996 0.974
Anomalous completeness 91.7 86.8 91.9
Anomalous multiplicity 1.9 1.9 1.9
Cell 190.81 106.87 49.62 90.0 97.14 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97924

Sweep:

SWEEP1

Files:

/programs/datagrid/376/gA9KG206_4_1_###.img

Images:

1 - 180

Beam:

(150.65, 158.8) -> (150.65, 158.87)

Distance:

400.0 -> 399.1

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.23 11.42 4.23
Low resolution limit 44.69 44.69 4.3
Completeness 97.7 93.4 96.8
Multiplicity 3.6 3.5 3.7
I/sigma 10.8 23.5 5.8
Rmerge 0.062 0.034 0.164
CC half 0.995 0.992 0.982
Anomalous completeness 91.5 86.2 92.5
Anomalous multiplicity 1.9 1.9 1.9
Cell 190.9 106.96 49.65 90.0 97.14 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97924

Sweep:

SWEEP1

Files:

/programs/datagrid/376/gA9KG206_4_1_###.img

Images:

1 - 180

Beam:

(150.65, 158.8) -> (150.65, 158.86)

Distance:

400.0 -> 396.3

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.32 8.99 3.32
Low resolution limit 41.61 41.61 3.38
Completeness 89.4 97.8 84.2
Multiplicity 2.5 3.5 2.4
I/sigma 3.7 14.7 1.1
Rmerge 0.131 0.056 0.661
CC half 0.99 0.996 0.94
Anomalous completeness 64.6 97.2 59.0
Anomalous multiplicity 1.5 1.5 1.5
Cell 190.77 106.769 49.621 90.0 97.155 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.