X-Ray Diffraction data from Mouse Protocadherin gamma A9 extracellular cadherin domains 1-5, source of 5SZN structure

Data DOI: 10.15785/SBGRID/376 | ID: 376

Publication DOI: 10.7554/eLife.20930

5SZN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: 1 Nov 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/376

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/376 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/376 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/376 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/376 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 376 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

Mouse Protocadherin gamma A9 extracellular cadherin domains 1-5

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

26 Jun 2015

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin gamma A9 extracellular cadherin domains 1-5. PDB Code 5SZN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/376.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

Anisotropic limits of 2.94/4.3/3.2 angstroms along a*/b*/c* were applied.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97924

Sweep:

SWEEP1

Files:

/programs/datagrid/376/gA9KG206_4_1_###.img

Images:

1 - 180

Beam:

(150.65, 158.8) -> (150.65, 158.9)

Distance:

400.0 -> 399.12

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.74 7.43 2.74
Low resolution limit 44.66 44.67 2.79
Completeness 98.8 96.7 98.5
Multiplicity 3.7 3.5 3.7
I/sigma 4.3 18.8 0.4
Rmerge 0.164 0.039 3.323
CC half 0.995 0.995 0.442
Anomalous completeness 95.0 87.8 96.2
Anomalous multiplicity 1.9 1.9 1.9
Cell 190.8 106.87 49.62 90.0 97.14 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97924

Sweep:

SWEEP1

Files:

/programs/datagrid/376/gA9KG206_4_1_###.img

Images:

1 - 180

Beam:

(150.65, 158.8) -> (150.65, 158.87)

Distance:

400.0 -> 399.3

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.75 7.45 2.75
Low resolution limit 41.62 41.63 2.8
Completeness 98.9 97.3 98.5
Multiplicity 3.7 3.5 3.8
I/sigma 4.3 18.3 0.4
Rmerge 0.163 0.042 3.375
CC half 0.994 0.995 0.465
Anomalous completeness 95.2 91.0 96.1
Anomalous multiplicity 1.9 1.9 1.9
Cell 190.84 106.87 49.63 90.0 97.14 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97924

Sweep:

SWEEP1

Files:

/programs/datagrid/376/gA9KG206_4_1_###.img

Images:

1 - 180

Beam:

(150.65, 158.8) -> (150.65, 158.85)

Distance:

400.0 -> 399.04

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.6 7.04 2.6
Low resolution limit 94.92 94.98 2.64
Completeness 99.2 99.9 89.1
Multiplicity 3.6 3.8 3.0
I/sigma 2.2 18.9 1.7
Rmerge 0.943 0.081 1.323
CC half 0.08 0.974 -0.009
Anomalous completeness 94.8 99.7 67.2
Anomalous multiplicity 1.9 1.9 1.9
Cell 191.313 107.232 49.753 90.0 97.125 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.