Data DOI: 10.15785/SBGRID/376 | ID: 376
Publication DOI: 10.7554/eLife.20930
5SZN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: 1 Nov 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/376
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/376 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/376 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/376 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/376 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 376 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
Mouse Protocadherin gamma A9 extracellular cadherin domains 1-5
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-E
Data Creation Date:
26 Jun 2015
Related Datasets:
None
Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin gamma A9 extracellular cadherin domains 1-5. PDB Code 5SZN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/376.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
Anisotropic limits of 2.94/4.3/3.2 angstroms along a*/b*/c* were applied.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97924
Sweep:
SWEEP1
Files:
/programs/datagrid/376/gA9KG206_4_1_###.img
Images:
1 - 180
Beam:
(150.65, 158.8) -> (150.65, 158.9)
Distance:
400.0 -> 399.12
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.74 | 7.43 | 2.74 |
| Low resolution limit | 44.66 | 44.67 | 2.79 |
| Completeness | 98.8 | 96.7 | 98.5 |
| Multiplicity | 3.7 | 3.5 | 3.7 |
| I/sigma | 4.3 | 18.8 | 0.4 |
| Rmerge | 0.164 | 0.039 | 3.323 |
| CC half | 0.995 | 0.995 | 0.442 |
| Anomalous completeness | 95.0 | 87.8 | 96.2 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 190.8 | 106.87 | 49.62 | 90.0 | 97.14 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97924
Sweep:
SWEEP1
Files:
/programs/datagrid/376/gA9KG206_4_1_###.img
Images:
1 - 180
Beam:
(150.65, 158.8) -> (150.65, 158.87)
Distance:
400.0 -> 399.3
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.75 | 7.45 | 2.75 |
| Low resolution limit | 41.62 | 41.63 | 2.8 |
| Completeness | 98.9 | 97.3 | 98.5 |
| Multiplicity | 3.7 | 3.5 | 3.8 |
| I/sigma | 4.3 | 18.3 | 0.4 |
| Rmerge | 0.163 | 0.042 | 3.375 |
| CC half | 0.994 | 0.995 | 0.465 |
| Anomalous completeness | 95.2 | 91.0 | 96.1 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 190.84 | 106.87 | 49.63 | 90.0 | 97.14 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97924
Sweep:
SWEEP1
Files:
/programs/datagrid/376/gA9KG206_4_1_###.img
Images:
1 - 180
Beam:
(150.65, 158.8) -> (150.65, 158.85)
Distance:
400.0 -> 399.04
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.6 | 7.04 | 2.6 |
| Low resolution limit | 94.92 | 94.98 | 2.64 |
| Completeness | 99.2 | 99.9 | 89.1 |
| Multiplicity | 3.6 | 3.8 | 3.0 |
| I/sigma | 2.2 | 18.9 | 1.7 |
| Rmerge | 0.943 | 0.081 | 1.323 |
| CC half | 0.08 | 0.974 | -0.009 |
| Anomalous completeness | 94.8 | 99.7 | 67.2 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 191.313 | 107.232 | 49.753 | 90.0 | 97.125 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
