X-Ray Diffraction data from Mouse Protocadherin gamma A8 extracellular cadherin domains 1-4, source of 5SZM structure

Data DOI: 10.15785/SBGRID/375 | ID: 375

Publication DOI: 10.7554/eLife.20930

5SZM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Nov. 1, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/375

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/375 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/375 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/375 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/375 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 375 ; shasum -c files.sha'

Storage requirements: 1.6G

Biological Sample:

Mouse Protocadherin gamma A8 extracellular cadherin domains 1-4

Dataset Type:

X-Ray Diffraction

Subject Composition:

DNA

Collection Facility:

APS 24-ID-E

Data Creation Date:

June 14, 2014

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin gamma A8 extracellular cadherin domains 1-4. PDB Code 5SZM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/375.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/375/KG121_1_1_###.img

Images:

1 - 90

Beam:

(151.48, 158.61) -> (151.48, 158.69)

Distance:

480.0 -> 479.89

Spacegroup:

I 41 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.31 8.97 3.31
Low resolution limit 50.59 50.6 3.37
Completeness 99.8 97.0 100.0
Multiplicity 7.2 6.6 7.4
I/sigma 7.6 32.1 0.9
Rmerge 0.231 0.039 2.066
CC half 0.996 0.998 0.267
Anomalous completeness 99.8 97.9 100.0
Anomalous multiplicity 3.8 3.8 3.8
Cell 257.957 257.957 105.15 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/375/KG121_1_1_###.img

Images:

1 - 90

Beam:

(151.48, 158.61) -> (151.48, 158.65)

Distance:

480.0 -> 478.02

Spacegroup:

I 4 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.62 12.46 4.62
Low resolution limit 46.24 46.24 4.7
Completeness 99.2 92.9 98.9
Multiplicity 7.2 6.2 7.4
I/sigma 20.0 47.3 7.3
Rmerge 0.059 0.022 0.239
CC half 0.999 0.999 0.988
Anomalous completeness 99.2 94.6 98.8
Anomalous multiplicity 3.9 3.9 3.9
Cell 257.48 257.48 105.01 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/375/KG121_1_1_###.img

Images:

1 - 90

Beam:

(151.48, 158.61) -> (151.48, 158.65)

Distance:

480.0 -> 478.7

Spacegroup:

I 4 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.49 9.45 3.49
Low resolution limit 46.24 46.24 3.55
Completeness 99.1 96.4 99.2
Multiplicity 7.3 6.6 7.5
I/sigma 10.4 45.1 0.6
Rmerge 0.137 0.025 2.692
CC half 0.999 0.999 0.379
Anomalous completeness 99.0 97.2 98.8
Anomalous multiplicity 3.9 3.9 3.9
Cell 257.48 257.48 105.01 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/375/KG121_1_1_###.img

Images:

1 - 90

Beam:

(151.48, 158.61) -> (151.48, 158.63)

Distance:

480.0 -> 473.23

Spacegroup:

I 41 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.5 9.47 3.5
Low resolution limit 46.13 46.13 3.56
Completeness 99.7 96.7 99.7
Multiplicity 7.3 6.7 7.5
I/sigma 8.8 36.2 0.9
Rmerge 0.168 0.033 2.253
CC half 0.997 0.999 0.527
Anomalous completeness 99.8 97.5 99.8
Anomalous multiplicity 3.9 3.9 3.9
Cell 256.871 256.871 104.77 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.