Data DOI: 10.15785/SBGRID/375 | ID: 375
Publication DOI: 10.7554/eLife.20930
5SZM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: 1 Nov 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/375
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/375 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/375 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/375 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/375 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 375 ; shasum -c files.sha'
Storage requirements: 1.6G
Biological Sample:
Mouse Protocadherin gamma A8 extracellular cadherin domains 1-4
Dataset Type:
X-Ray Diffraction
Subject Composition:
DNA
Collection Facility:
APS 24-ID-E
Data Creation Date:
14 Jun 2014
Related Datasets:
None
Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin gamma A8 extracellular cadherin domains 1-4. PDB Code 5SZM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/375.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/375/KG121_1_1_###.img
Images:
1 - 90
Beam:
(151.48, 158.61) -> (151.48, 158.65)
Distance:
480.0 -> 478.09
Spacegroup:
I 4 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.35 | 9.08 | 3.35 |
| Low resolution limit | 50.5 | 50.51 | 3.41 |
| Completeness | 99.7 | 96.7 | 99.8 |
| Multiplicity | 7.4 | 6.6 | 7.5 |
| I/sigma | 9.4 | 44.9 | 0.4 |
| Rmerge | 0.157 | 0.025 | 4.088 |
| CC half | 0.999 | 0.999 | 0.218 |
| Anomalous completeness | 99.6 | 97.5 | 99.3 |
| Anomalous multiplicity | 3.9 | 3.9 | 3.9 |
| Cell | 257.51 | 257.51 | 105.02 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/375/KG121_1_1_###.img
Images:
1 - 90
Beam:
(151.48, 158.61) -> (151.48, 158.65)
Distance:
480.0 -> 478.66
Spacegroup:
I 4 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.34 | 9.05 | 3.34 |
| Low resolution limit | 50.5 | 50.51 | 3.4 |
| Completeness | 99.7 | 96.6 | 100.0 |
| Multiplicity | 7.4 | 6.6 | 7.5 |
| I/sigma | 9.4 | 45.0 | 0.4 |
| Rmerge | 0.159 | 0.025 | 4.157 |
| CC half | 0.999 | 0.999 | 0.219 |
| Anomalous completeness | 99.6 | 97.6 | 99.7 |
| Anomalous multiplicity | 3.9 | 3.9 | 3.9 |
| Cell | 257.51 | 257.51 | 105.02 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/375/KG121_1_1_###.img
Images:
1 - 90
Beam:
(151.48, 158.61) -> (151.48, 158.64)
Distance:
480.0 -> 474.65
Spacegroup:
I 4 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.28 | 8.91 | 3.28 |
| Low resolution limit | 128.61 | 128.71 | 3.34 |
| Completeness | 99.9 | 99.1 | 100.0 |
| Multiplicity | 7.4 | 6.8 | 7.6 |
| I/sigma | 7.2 | 54.5 | 0.3 |
| Rmerge | 0.176 | 0.038 | 3.374 |
| CC half | 0.994 | 0.992 | 0.283 |
| Anomalous completeness | 100.0 | 99.8 | 100.0 |
| Anomalous multiplicity | 3.9 | 3.9 | 3.9 |
| Cell | 257.227 | 257.227 | 104.922 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
