X-Ray Diffraction data from Mouse Protocadherin gamma A1 extracellular cadherin domains 1-4, source of 5SZL structure

Data DOI: 10.15785/SBGRID/374 | ID: 374

Publication DOI: 10.7554/eLife.20930

5SZL Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Nov. 1, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/374

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/374 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/374 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/374 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/374 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 374 ; shasum -c files.sha'

Storage requirements: 1.1G

Biological Sample:

Mouse Protocadherin gamma A1 extracellular cadherin domains 1-4

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

March 24, 2016

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin gamma A1 extracellular cadherin domains 1-4. PDB Code 5SZL", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/374.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/374/gA1_KG234_5_1_###.img

Images:

1 - 60

Beam:

(148.37, 158.54) -> (148.37, 158.81)

Distance:

550.0 -> 549.68

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.64 12.59 4.64
Low resolution limit 91.8 91.81 4.72
Completeness 100.0 98.4 100.0
Multiplicity 3.5 3.2 3.5
I/sigma 4.8 20.2 1.1
Rmerge 0.193 0.025 1.137
CC half 0.996 0.999 0.493
Anomalous completeness 98.6 99.4 98.7
Anomalous multiplicity 1.9 1.9 1.9
Cell 108.146 108.146 462.889 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/374/gA1_KG234_5_1_###.img

Images:

1 - 60

Beam:

(148.37, 158.54) -> (148.37, 158.81)

Distance:

550.0 -> 547.31

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 6.75 18.25 6.75
Low resolution limit 79.94 79.95 6.87
Completeness 99.3 89.8 100.0
Multiplicity 3.4 3.0 3.6
I/sigma 12.6 32.6 2.9
Rmerge 0.06 0.018 0.441
CC half 0.998 0.999 0.844
Anomalous completeness 96.4 90.2 98.3
Anomalous multiplicity 1.9 1.9 1.9
Cell 107.9 107.9 463.23 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/374/gA1_KG234_5_1_###.img

Images:

1 - 60

Beam:

(148.37, 158.54) -> (148.37, 158.81)

Distance:

550.0 -> 548.36

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 6.82 18.47 6.82
Low resolution limit 91.5 91.51 6.94
Completeness 99.3 90.2 100.0
Multiplicity 3.4 2.9 3.5
I/sigma 13.2 33.3 3.5
Rmerge 0.056 0.02 0.368
CC half 0.998 0.998 0.851
Anomalous completeness 96.5 91.0 98.7
Anomalous multiplicity 1.9 1.9 1.9
Cell 107.78 107.78 462.72 90.0 90.0 120.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.