X-Ray Diffraction data from Sidekick chimera of sidekick-2 immunoglobulin domains 1-2 and sidekick-1 immunoglobulin domains 3-4, source of 5K6Z structure

Data DOI: 10.15785/SBGRID/372 | ID: 372

Publication DOI: 10.7554/eLife.19058

5K6Z Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Oct. 28, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/372

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/372 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/372 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/372 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/372 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 372 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

Sidekick chimera of sidekick-2 immunoglobulin domains 1-2 and sidekick-1 immunoglobulin domains 3-4

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-E

Data Creation Date:

June 14, 2014

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Sidekick chimera of sidekick-2 immunoglobulin domains 1-2 and sidekick-1 immunoglobulin domains 3-4. PDB Code 5K6Z", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/372.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/372/KG122_5_1_###.img

Images:

1 - 180

Beam:

(152.19, 158.76) -> (152.19, 158.85)

Distance:

380.0 -> 379.66

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.49 6.76 2.49
Low resolution limit 73.7 73.73 2.53
Completeness 100.0 99.8 100.0
Multiplicity 3.6 3.5 3.2
I/sigma 6.0 12.0 1.4
Rmerge 0.161 0.048 0.94
CC half 0.981 0.996 0.356
Anomalous completeness 92.9 98.1 87.7
Anomalous multiplicity 1.9 1.9 1.9
Cell 85.574 78.311 146.209 90.0 90.271 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/372/KG122_5_1_###.img

Images:

1 - 180

Beam:

(152.19, 158.76) -> (152.19, 158.76)

Distance:

380.0 -> 380.44

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.46 6.68 2.46
Low resolution limit 74.08 74.11 2.5
Completeness 99.9 100.0 99.6
Multiplicity 7.0 6.6 6.2
I/sigma 8.4 21.1 1.0
Rmerge 0.208 0.055 2.197
CC half 0.99 0.997 0.407
Anomalous completeness 99.4 99.9 99.6
Anomalous multiplicity 3.7 3.7 3.7
Cell 85.89 146.37 78.49 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/372/KG122_5_1_###.img

Images:

1 - 180

Beam:

(152.19, 158.76) -> (152.19, 158.79)

Distance:

380.0 -> 380.42

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.49 6.76 2.49
Low resolution limit 74.07 74.1 2.53
Completeness 99.9 100.0 99.4
Multiplicity 7.1 6.6 6.4
I/sigma 8.7 21.2 1.2
Rmerge 0.205 0.055 2.125
CC half 0.99 0.997 0.358
Anomalous completeness 99.4 99.7 99.3
Anomalous multiplicity 3.8 3.8 3.8
Cell 85.88 146.36 78.49 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/372/KG122_5_1_###.img

Images:

1 - 180

Beam:

(152.19, 158.76) -> (152.19, 158.78)

Distance:

380.0 -> 380.18

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.86 7.76 2.86
Low resolution limit 86.49 86.53 2.91
Completeness 53.6 100.0 0.3
Multiplicity 4.0 5.6 1.0
I/sigma 10.4 14.9 3.0
Rmerge 0.08 0.043 0.0
CC half 0.992 0.999 0.0
Anomalous completeness 38.1 99.1 0.0
Anomalous multiplicity 2.5 2.5 2.5
Cell 86.486 147.138 78.888 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.