Data DOI: 10.15785/SBGRID/372 | ID: 372
Publication DOI: 10.7554/eLife.19058
5K6Z Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: 28 Oct 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/372
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/372 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/372 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/372 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/372 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 372 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
Sidekick chimera of sidekick-2 immunoglobulin domains 1-2 and sidekick-1 immunoglobulin domains 3-4
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-E
Data Creation Date:
14 Jun 2014
Related Datasets:
None
Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Sidekick chimera of sidekick-2 immunoglobulin domains 1-2 and sidekick-1 immunoglobulin domains 3-4. PDB Code 5K6Z", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/372.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/372/KG122_5_1_###.img
Images:
1 - 180
Beam:
(152.19, 158.76) -> (152.19, 158.76)
Distance:
380.0 -> 380.48
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.44 | 6.62 | 2.44 |
| Low resolution limit | 73.15 | 73.19 | 2.48 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 7.0 | 6.5 | 6.1 |
| I/sigma | 8.2 | 20.4 | 1.0 |
| Rmerge | 0.236 | 0.058 | 2.905 |
| CC half | 0.99 | 0.997 | 0.342 |
| Anomalous completeness | 99.5 | 99.9 | 99.9 |
| Anomalous multiplicity | 3.7 | 3.7 | 3.7 |
| Cell | 85.86 | 146.31 | 78.47 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/372/KG122_5_1_###.img
Images:
1 - 180
Beam:
(152.19, 158.76) -> (152.19, 158.79)
Distance:
380.0 -> 380.42
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.44 | 6.62 | 2.44 |
| Low resolution limit | 74.04 | 74.08 | 2.48 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 7.0 | 6.5 | 6.1 |
| I/sigma | 8.2 | 20.4 | 1.0 |
| Rmerge | 0.235 | 0.059 | 2.851 |
| CC half | 0.989 | 0.996 | 0.328 |
| Anomalous completeness | 99.5 | 99.9 | 99.9 |
| Anomalous multiplicity | 3.7 | 3.7 | 3.7 |
| Cell | 85.85 | 146.31 | 78.47 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/372/KG122_5_1_###.img
Images:
1 - 180
Beam:
(152.19, 158.76) -> (152.19, 158.77)
Distance:
380.0 -> 383.18
Spacegroup:
P 2 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.33 | 6.31 | 2.33 |
| Low resolution limit | 148.2 | 148.5 | 2.37 |
| Completeness | 99.8 | 100.0 | 94.8 |
| Multiplicity | 6.1 | 6.5 | 3.6 |
| I/sigma | 8.9 | 13.0 | 20.0 |
| Rmerge | 0.207 | 0.095 | 0.269 |
| CC half | 0.696 | 0.991 | 0.253 |
| Anomalous completeness | 98.9 | 100.0 | 85.7 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 79.442 | 87.001 | 148.196 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
