X-Ray Diffraction data from Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 2, source of 5K6Y structure

Data DOI: 10.15785/SBGRID/371 | ID: 371

Publication DOI: 10.7554/eLife.19058

5K6Y Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Oct. 28, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/371

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/371 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/371 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/371 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/371 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 371 ; shasum -c files.sha'

Storage requirements: 3.5G

Biological Sample:

Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 2

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

Oct. 8, 2014

Related Datasets:

None


Cite this Dataset

Goodman, KM ; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 2. PDB Code 5K6Y", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/371.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9763

Sweep:

SWEEP1

Files:

/programs/datagrid/371/SH001_1_1_####.cbf

Images:

1 - 600

Beam:

(216.8, 220.48) -> (216.8, 220.55)

Distance:

620.0 -> 620.31

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.97 8.06 2.97
Low resolution limit 106.32 106.39 3.02
Completeness 97.3 96.5 98.1
Multiplicity 3.1 3.1 3.1
I/sigma 6.0 13.3 1.0
Rmerge 0.124 0.047 0.909
CC half 0.952 0.994 0.319
Anomalous completeness 88.8 90.8 87.2
Anomalous multiplicity 1.7 1.7 1.7
Cell 82.536 88.185 106.323 90.0 90.055 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9763

Sweep:

SWEEP1

Files:

/programs/datagrid/371/SH001_1_1_####.cbf

Images:

1 - 600

Beam:

(216.8, 220.48) -> (216.8, 220.39)

Distance:

620.0 -> 624.9

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.98 8.07 2.98
Low resolution limit 40.85 40.85 3.03
Completeness 99.9 100.0 100.0
Multiplicity 6.3 5.5 6.7
I/sigma 10.3 26.2 1.1
Rmerge 0.107 0.039 1.34
CC half 0.998 0.999 0.576
Anomalous completeness 98.6 97.9 99.9
Anomalous multiplicity 3.4 3.4 3.4
Cell 88.44 106.65 82.62 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9763

Sweep:

SWEEP1

Files:

/programs/datagrid/371/SH001_1_1_####.cbf

Images:

1 - 600

Beam:

(216.8, 220.48) -> (216.8, 220.37)

Distance:

620.0 -> 624.55

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.97 8.06 2.97
Low resolution limit 106.67 106.74 3.02
Completeness 100.0 100.0 100.0
Multiplicity 6.3 5.5 6.7
I/sigma 10.2 26.0 1.1
Rmerge 0.107 0.039 1.369
CC half 0.997 0.998 0.586
Anomalous completeness 98.6 97.8 99.6
Anomalous multiplicity 3.4 3.4 3.4
Cell 82.63 88.45 106.67 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9763

Sweep:

SWEEP1

Files:

/programs/datagrid/371/SH001_1_1_####.cbf

Images:

1 - 600

Beam:

(216.8, 220.48) -> (216.8, 220.35)

Distance:

620.0 -> 620.19

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.91 7.89 2.91
Low resolution limit 88.17 88.21 2.96
Completeness 98.5 98.2 94.6
Multiplicity 3.3 3.2 3.3
I/sigma 6.5 14.4 1.2
Rmerge 0.1 0.051 0.704
CC half 0.98 0.994 0.644
Anomalous completeness 93.5 95.1 89.2
Anomalous multiplicity 1.8 1.8 1.8
Cell 82.447 88.172 106.55 90.0 90.304 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.