Data DOI: 10.15785/SBGRID/371 | ID: 371
Publication DOI: 10.7554/eLife.19058
5K6Y Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: 28 Oct 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/371
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/371 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/371 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/371 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/371 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 371 ; shasum -c files.sha'
Storage requirements: 3.5G
Biological Sample:
Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 2
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-C
Data Creation Date:
8 Oct 2014
Related Datasets:
None
Goodman, KM ; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 2. PDB Code 5K6Y", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/371.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9763
Sweep:
SWEEP1
Files:
/programs/datagrid/371/SH001_1_1_####.cbf
Images:
1 - 600
Beam:
(216.8, 220.48) -> (216.8, 220.41)
Distance:
620.0 -> 625.54
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.84 | 7.69 | 2.84 |
| Low resolution limit | 40.84 | 40.85 | 2.89 |
| Completeness | 100.0 | 100.0 | 99.7 |
| Multiplicity | 6.3 | 5.5 | 5.1 |
| I/sigma | 9.0 | 25.4 | 0.5 |
| Rmerge | 0.117 | 0.042 | 2.196 |
| CC half | 0.997 | 0.998 | 0.268 |
| Anomalous completeness | 98.9 | 98.4 | 97.9 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 88.43 | 106.64 | 82.61 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9763
Sweep:
SWEEP1
Files:
/programs/datagrid/371/SH001_1_1_####.cbf
Images:
1 - 600
Beam:
(216.8, 220.48) -> (216.8, 220.37)
Distance:
620.0 -> 624.59
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.84 | 7.71 | 2.84 |
| Low resolution limit | 82.6 | 82.63 | 2.89 |
| Completeness | 100.0 | 100.0 | 99.8 |
| Multiplicity | 6.3 | 5.5 | 5.1 |
| I/sigma | 9.1 | 25.7 | 0.5 |
| Rmerge | 0.116 | 0.041 | 2.226 |
| CC half | 0.997 | 0.998 | 0.275 |
| Anomalous completeness | 98.9 | 98.1 | 97.9 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 82.6 | 88.42 | 106.63 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9763
Sweep:
SWEEP1
Files:
/programs/datagrid/371/SH001_1_1_####.cbf
Images:
1 - 600
Beam:
(216.8, 220.48) -> (216.8, 220.38)
Distance:
620.0 -> 625.44
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.72 | 7.37 | 2.72 |
| Low resolution limit | 107.22 | 107.3 | 2.76 |
| Completeness | 100.0 | 100.0 | 98.7 |
| Multiplicity | 6.1 | 5.8 | 3.7 |
| I/sigma | 5.3 | 30.2 | 0.1 |
| Rmerge | 0.155 | 0.054 | 1.757 |
| CC half | 0.993 | 0.997 | 0.23 |
| Anomalous completeness | 99.1 | 100.0 | 92.8 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 83.001 | 88.781 | 107.217 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
