Data DOI: 10.15785/SBGRID/370 | ID: 370
Publication DOI: 10.7554/eLife.19058
5K6X Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: Oct. 28, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/370
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/370 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/370 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/370 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/370 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 370 ; shasum -c files.sha'
Storage requirements: 2.4G
Biological Sample:
Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
BNL NSLS X4C
Data Creation Date:
Sept. 23, 2013
Related Datasets:
None
Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 1. PDB Code 5K6X", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/370.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
Excluded images, 80 to 127, 171, and 296 to 305
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/370/kg24-1.####
Images:
1 - 305
Beam:
(81.0, 81.0) -> (81.0, 80.94)
Distance:
200.0 -> 200.61
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.56 | 6.95 | 2.56 |
| Low resolution limit | 54.13 | 54.14 | 2.6 |
| Completeness | 97.5 | 99.0 | 71.7 |
| Multiplicity | 6.3 | 6.2 | 3.1 |
| I/sigma | 11.3 | 24.0 | 1.2 |
| Rmerge | 0.134 | 0.049 | 1.217 |
| CC half | 0.994 | 0.996 | 0.41 |
| Anomalous completeness | 96.7 | 98.3 | 66.0 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 55.079 | 129.961 | 78.395 | 90.0 | 100.644 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/370/kg24-1.####
Images:
1 - 305
Beam:
(81.0, 81.0) -> (81.0, 80.9)
Distance:
200.0 -> 200.57
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.58 | 6.99 | 2.58 |
| Low resolution limit | 39.09 | 39.1 | 2.62 |
| Completeness | 97.9 | 99.9 | 74.4 |
| Multiplicity | 6.4 | 6.2 | 3.6 |
| I/sigma | 12.9 | 33.4 | 1.0 |
| Rmerge | 0.091 | 0.035 | 0.882 |
| CC half | 0.998 | 0.999 | 0.596 |
| Anomalous completeness | 96.6 | 96.9 | 65.6 |
| Anomalous multiplicity | 3.3 | 3.3 | 3.3 |
| Cell | 55.29 | 130.52 | 78.71 | 90.0 | 100.81 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/370/kg24-1.####
Images:
1 - 305
Beam:
(81.0, 81.0) -> (81.0, 80.9)
Distance:
200.0 -> 201.08
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.58 | 7.0 | 2.58 |
| Low resolution limit | 65.26 | 65.28 | 2.62 |
| Completeness | 97.8 | 99.8 | 73.0 |
| Multiplicity | 6.4 | 6.2 | 3.7 |
| I/sigma | 12.9 | 33.4 | 1.0 |
| Rmerge | 0.091 | 0.035 | 0.899 |
| CC half | 0.998 | 0.999 | 0.599 |
| Anomalous completeness | 96.5 | 96.6 | 66.0 |
| Anomalous multiplicity | 3.3 | 3.3 | 3.3 |
| Cell | 55.29 | 130.52 | 78.71 | 90.0 | 100.81 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/370/kg24-1.####
Images:
1 - 305
Beam:
(81.0, 81.0) -> (81.0, 80.91)
Distance:
200.0 -> 201.32
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.58 | 7.0 | 2.58 |
| Low resolution limit | 54.24 | 54.25 | 2.62 |
| Completeness | 99.5 | 100.0 | 92.8 |
| Multiplicity | 6.3 | 6.3 | 5.0 |
| I/sigma | 7.0 | 16.5 | 1.0 |
| Rmerge | 0.281 | 0.061 | 1.655 |
| CC half | 0.953 | 0.986 | 0.537 |
| Anomalous completeness | 99.2 | 99.8 | 91.0 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 55.23 | 130.433 | 78.668 | 90.0 | 100.891 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
