X-Ray Diffraction data from Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 1, source of 5K6X structure

Data DOI: 10.15785/SBGRID/370 | ID: 370

Publication DOI: 10.7554/eLife.19058

5K6X Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Oct. 28, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/370

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/370 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/370 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/370 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/370 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 370 ; shasum -c files.sha'

Storage requirements: 2.4G

Biological Sample:

Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BNL NSLS X4C

Data Creation Date:

Sept. 23, 2013

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 1. PDB Code 5K6X", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/370.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

Excluded images, 80 to 127, 171, and 296 to 305

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/370/kg24-1.####

Images:

1 - 305

Beam:

(81.0, 81.0) -> (81.0, 80.94)

Distance:

200.0 -> 200.61

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.56 6.95 2.56
Low resolution limit 54.13 54.14 2.6
Completeness 97.5 99.0 71.7
Multiplicity 6.3 6.2 3.1
I/sigma 11.3 24.0 1.2
Rmerge 0.134 0.049 1.217
CC half 0.994 0.996 0.41
Anomalous completeness 96.7 98.3 66.0
Anomalous multiplicity 3.2 3.2 3.2
Cell 55.079 129.961 78.395 90.0 100.644 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/370/kg24-1.####

Images:

1 - 305

Beam:

(81.0, 81.0) -> (81.0, 80.9)

Distance:

200.0 -> 200.57

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.58 6.99 2.58
Low resolution limit 39.09 39.1 2.62
Completeness 97.9 99.9 74.4
Multiplicity 6.4 6.2 3.6
I/sigma 12.9 33.4 1.0
Rmerge 0.091 0.035 0.882
CC half 0.998 0.999 0.596
Anomalous completeness 96.6 96.9 65.6
Anomalous multiplicity 3.3 3.3 3.3
Cell 55.29 130.52 78.71 90.0 100.81 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/370/kg24-1.####

Images:

1 - 305

Beam:

(81.0, 81.0) -> (81.0, 80.9)

Distance:

200.0 -> 201.08

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.58 7.0 2.58
Low resolution limit 65.26 65.28 2.62
Completeness 97.8 99.8 73.0
Multiplicity 6.4 6.2 3.7
I/sigma 12.9 33.4 1.0
Rmerge 0.091 0.035 0.899
CC half 0.998 0.999 0.599
Anomalous completeness 96.5 96.6 66.0
Anomalous multiplicity 3.3 3.3 3.3
Cell 55.29 130.52 78.71 90.0 100.81 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97907

Sweep:

SWEEP1

Files:

/programs/datagrid/370/kg24-1.####

Images:

1 - 305

Beam:

(81.0, 81.0) -> (81.0, 80.91)

Distance:

200.0 -> 201.32

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.58 7.0 2.58
Low resolution limit 54.24 54.25 2.62
Completeness 99.5 100.0 92.8
Multiplicity 6.3 6.3 5.0
I/sigma 7.0 16.5 1.0
Rmerge 0.281 0.061 1.655
CC half 0.953 0.986 0.537
Anomalous completeness 99.2 99.8 91.0
Anomalous multiplicity 3.2 3.2 3.2
Cell 55.23 130.433 78.668 90.0 100.891 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.