Data DOI: 10.15785/SBGRID/370 | ID: 370
Publication DOI: 10.7554/eLife.19058
5K6X Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: Oct. 28, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/370
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/370 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/370 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/370 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/370 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 370 ; shasum -c files.sha'
Storage requirements: 2.4G
Biological Sample:
Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
BNL NSLS X4C
Data Creation Date:
Sept. 23, 2013
Related Datasets:
None
Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Sidekick-2 immunoglobulin domains 1-4, crystal form 1. PDB Code 5K6X", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/370.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
Excluded images, 80 to 127, 171, and 296 to 305
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/370/kg24-1.####
Images:
1 - 305
Beam:
(81.0, 81.0) -> (81.0, 80.9)
Distance:
200.0 -> 200.57
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.57 | 6.98 | 2.57 |
| Low resolution limit | 39.08 | 39.09 | 2.62 |
| Completeness | 97.7 | 99.5 | 63.6 |
| Multiplicity | 6.3 | 6.0 | 3.2 |
| I/sigma | 12.8 | 32.1 | 1.1 |
| Rmerge | 0.093 | 0.036 | 0.689 |
| CC half | 0.998 | 0.998 | 0.69 |
| Anomalous completeness | 95.7 | 94.6 | 54.4 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 55.28 | 130.49 | 78.7 | 90.0 | 100.82 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/370/kg24-1.####
Images:
1 - 305
Beam:
(81.0, 81.0) -> (81.0, 80.9)
Distance:
200.0 -> 201.08
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.57 | 6.98 | 2.57 |
| Low resolution limit | 50.13 | 50.14 | 2.62 |
| Completeness | 97.6 | 99.4 | 63.2 |
| Multiplicity | 6.3 | 6.0 | 3.2 |
| I/sigma | 12.9 | 32.3 | 1.1 |
| Rmerge | 0.092 | 0.036 | 0.68 |
| CC half | 0.998 | 0.998 | 0.685 |
| Anomalous completeness | 95.7 | 94.3 | 54.7 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 55.28 | 130.49 | 78.7 | 90.0 | 100.82 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97907
Sweep:
SWEEP1
Files:
/programs/datagrid/370/kg24-1.####
Images:
1 - 305
Beam:
(81.0, 81.0) -> (81.0, 80.9)
Distance:
200.0 -> 200.98
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.53 | 6.87 | 2.53 |
| Low resolution limit | 65.1 | 65.13 | 2.57 |
| Completeness | 95.4 | 100.0 | 12.7 |
| Multiplicity | 6.2 | 6.3 | 1.7 |
| I/sigma | 7.0 | 21.8 | 34.2 |
| Rmerge | 0.159 | 0.068 | 0.081 |
| CC half | 0.897 | 0.99 | 0.392 |
| Anomalous completeness | 94.8 | 99.4 | 7.1 |
| Anomalous multiplicity | 3.1 | 3.1 | 3.1 |
| Cell | 55.117 | 130.21 | 78.539 | 90.0 | 100.904 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
