X-Ray Diffraction data from Mouse Sidekick-1 immunoglobulin domains 1-5, source of 5K6W structure

Data DOI: 10.15785/SBGRID/369 | ID: 369

Publication DOI: 10.7554/eLife.19058

5K6W Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shapiro Laboratory, Columbia University

Release Date: Oct. 28, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/369

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/369 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/369 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/369 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/369 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 369 ; shasum -c files.sha'

Storage requirements: 817M

Biological Sample:

Mouse Sidekick-1 immunoglobulin domains 1-5

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BNL NSLS X4C

Data Creation Date:

April 5, 2013

Related Datasets:

None


Cite this Dataset

Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Sidekick-1 immunoglobulin domains 1-5. PDB Code 5K6W", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/369.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kerry M GoodmanData Collector, DepositorColumbia University
Larry ShapiroPIColumbia University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/369/mSdk15_16-5.####

Images:

1 - 102

Beam:

(81.0, 81.0) -> (81.0, 80.88)

Distance:

200.0 -> 200.93

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.97 8.05 2.97
Low resolution limit 43.34 43.34 3.02
Completeness 99.1 95.6 98.7
Multiplicity 4.2 4.0 4.3
I/sigma 8.0 26.7 1.0
Rmerge 0.223 0.035 2.451
CC half 0.989 0.998 0.323
Anomalous completeness 97.5 95.2 97.5
Anomalous multiplicity 2.3 2.3 2.3
Cell 69.93 152.27 158.12 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/369/mSdk15_16-5.####

Images:

1 - 102

Beam:

(81.0, 81.0) -> (81.0, 80.88)

Distance:

200.0 -> 200.54

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.97 8.05 2.97
Low resolution limit 48.97 48.98 3.02
Completeness 98.9 95.6 98.5
Multiplicity 4.2 4.0 4.3
I/sigma 8.0 26.6 1.0
Rmerge 0.223 0.035 2.441
CC half 0.989 0.998 0.33
Anomalous completeness 97.3 95.3 97.3
Anomalous multiplicity 2.2 2.2 2.2
Cell 69.93 152.26 158.12 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97915

Sweep:

SWEEP1

Files:

/programs/datagrid/369/mSdk15_16-5.####

Images:

1 - 102

Beam:

(81.0, 81.0) -> (81.0, 80.88)

Distance:

200.0 -> 199.89

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.16 8.56 3.16
Low resolution limit 58.88 58.89 3.21
Completeness 69.9 63.8 62.6
Multiplicity 3.1 3.3 2.9
I/sigma 5.9 14.8 2.0
Rmerge 0.194 0.044 0.656
CC half 0.94 0.995 0.313
Anomalous completeness 60.8 58.5 53.3
Anomalous multiplicity 1.7 1.7 1.7
Cell 69.868 151.985 157.594 90.0 90.0 89.853

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.