Data DOI: 10.15785/SBGRID/369 | ID: 369
Publication DOI: 10.7554/eLife.19058
5K6W Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: 28 Oct 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/369
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/369 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/369 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/369 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/369 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 369 ; shasum -c files.sha'
Storage requirements: 817M
Biological Sample:
Mouse Sidekick-1 immunoglobulin domains 1-5
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
BNL NSLS X4C
Data Creation Date:
5 Apr 2013
Related Datasets:
None
Goodman, KM; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Sidekick-1 immunoglobulin domains 1-5. PDB Code 5K6W", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/369.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/369/mSdk15_16-5.####
Images:
1 - 102
Beam:
(81.0, 81.0) -> (81.0, 80.88)
Distance:
200.0 -> 200.93
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.86 | 7.75 | 2.86 |
| Low resolution limit | 43.35 | 43.36 | 2.91 |
| Completeness | 99.4 | 95.8 | 99.5 |
| Multiplicity | 4.2 | 4.0 | 4.3 |
| I/sigma | 7.4 | 26.8 | 0.8 |
| Rmerge | 0.243 | 0.035 | 3.194 |
| CC half | 0.989 | 0.998 | 0.291 |
| Anomalous completeness | 97.8 | 95.4 | 98.0 |
| Anomalous multiplicity | 2.2 | 2.2 | 2.2 |
| Cell | 69.96 | 152.32 | 158.18 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/369/mSdk15_16-5.####
Images:
1 - 102
Beam:
(81.0, 81.0) -> (81.0, 80.88)
Distance:
200.0 -> 200.54
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.86 | 7.75 | 2.86 |
| Low resolution limit | 48.99 | 49.0 | 2.91 |
| Completeness | 99.4 | 95.7 | 99.5 |
| Multiplicity | 4.2 | 4.0 | 4.3 |
| I/sigma | 7.4 | 27.0 | 0.8 |
| Rmerge | 0.243 | 0.035 | 3.182 |
| CC half | 0.989 | 0.998 | 0.293 |
| Anomalous completeness | 97.8 | 95.1 | 98.2 |
| Anomalous multiplicity | 2.2 | 2.2 | 2.2 |
| Cell | 69.96 | 152.32 | 158.18 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97915
Sweep:
SWEEP1
Files:
/programs/datagrid/369/mSdk15_16-5.####
Images:
1 - 102
Beam:
(81.0, 81.0) -> (81.0, 80.87)
Distance:
200.0 -> 199.59
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.76 | 7.47 | 2.76 |
| Low resolution limit | 43.01 | 43.01 | 2.8 |
| Completeness | 99.5 | 97.2 | 97.8 |
| Multiplicity | 4.3 | 4.1 | 4.3 |
| I/sigma | 2.2 | 10.6 | 0.4 |
| Rmerge | 0.31 | 0.082 | 0.74 |
| CC half | 0.952 | 0.984 | 0.159 |
| Anomalous completeness | 99.6 | 99.8 | 97.6 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 69.733 | 151.814 | 157.42 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
