X-Ray Diffraction data from Brucella periplasmic binding protein YehZ, source of 5TEU structure

Data DOI: 10.15785/SBGRID/364 | ID: 364

5TEU Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Crosson Laboratory, University of Chicago

Release Date: Sept. 23, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/364

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/364 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/364 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/364 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/364 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 364 ; shasum -c files.sha'

Storage requirements: 2.7G

Biological Sample:

Brucella periplasmic binding protein YehZ

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS sector 21 beamline ID-F

Data Creation Date:

July 2, 2013

Related Datasets:

None


Cite this Dataset

Herrou, J; Crosson, S. 2016. "X-Ray Diffraction data for: Brucella periplasmic binding protein YehZ. PDB Code 5TEU", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/364.

Download Citation

Dataset Description

native x-ray diffraction dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Julien HerrouData CollectorUniversity of Chicago
Sean CrossonData Collector, Depositor, PIUniversity of Chicago

Reprocessing Instructions

data were processed in xia2 using the -3da flag. The resolution is 1.62; space group is P42 21 2

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/364/226_7.###

Images:

1 - 150

Beam:

(112.35, 112.06) -> (112.35, 112.21)

Distance:

140.0 -> 139.99

Spacegroup:

P 42 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.45 3.93 1.45
Low resolution limit 40.66 40.68 1.48
Completeness 100.0 100.0 100.0
Multiplicity 12.0 11.6 9.5
I/sigma 10.1 19.8 1.3
Rmerge 0.089 0.037 2.264
CC half 0.999 0.998 0.342
Anomalous completeness 100.0 99.8 100.0
Anomalous multiplicity 6.2 6.2 6.2
Cell 111.403 111.403 121.979 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/364/226_7.###

Images:

1 - 150

Beam:

(112.35, 112.06) -> (112.35, 112.11)

Distance:

140.0 -> 139.76

Spacegroup:

P 42 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.48 4.02 1.48
Low resolution limit 49.81 49.83 1.51
Completeness 100.0 100.0 100.0
Multiplicity 12.2 11.3 12.2
I/sigma 19.9 62.1 1.1
Rmerge 0.066 0.028 2.179
CC half 0.999 0.999 0.421
Anomalous completeness 100.0 100.0 99.9
Anomalous multiplicity 6.4 6.4 6.4
Cell 111.37 111.37 122.0 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/364/226_7.###

Images:

1 - 150

Beam:

(112.35, 112.06) -> (112.35, 112.11)

Distance:

140.0 -> 139.82

Spacegroup:

P 42 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.48 4.02 1.48
Low resolution limit 55.69 55.72 1.51
Completeness 100.0 100.0 100.0
Multiplicity 12.2 11.3 12.2
I/sigma 19.9 62.1 1.1
Rmerge 0.066 0.028 2.18
CC half 0.999 0.999 0.446
Anomalous completeness 100.0 100.0 99.9
Anomalous multiplicity 6.4 6.4 6.4
Cell 111.37 111.37 122.0 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/364/226_7.###

Images:

1 - 150

Beam:

(112.35, 112.06) -> (112.35, 112.17)

Distance:

140.0 -> 139.82

Spacegroup:

P 42 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.47 3.99 1.47
Low resolution limit 61.01 61.06 1.5
Completeness 100.0 100.0 99.1
Multiplicity 12.3 11.6 11.7
I/sigma 17.2 50.9 1.0
Rmerge 0.075 0.031 2.66
CC half 0.997 0.991 0.523
Anomalous completeness 99.9 99.7 99.1
Anomalous multiplicity 6.4 6.4 6.4
Cell 111.409 111.409 122.023 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.