Data DOI: 10.15785/SBGRID/363 | ID: 363
5T4N Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Gaudet Laboratory, Harvard University
Release Date: 14 Feb 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/363
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/363 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/363 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/363 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/363 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 363 ; shasum -c files.sha'
Storage requirements: 2.0G
Biological Sample:
Human Protocadherin-15 EC3-5 D414A Variant
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
24-ID-E, NE-CAT, APS, Chicago, IL
Data Creation Date:
8 Nov 2013
Related Datasets:
None
Powers, RE; Sotomayor, M; Gaudet, R. 2017. "X-Ray Diffraction data for: Human Protocadherin-15 EC3-5 D414A Variant. PDB Code 5T4N", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/363.
Native dataset used to determine the structure of Human Protocadherin-15 EC3-5 D414A Variant using molecular replacement.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Robert E Powers | Data Collector, Depositor | Biophysics Graduate Program, Harvard University, Boston MA 02115 |
| Rachelle Gaudet | Department of Molecular and Cellular Biology, Harvard University, Cambridge MA 02138 | |
| Marcos Sotomayor | Department of Chemistry and Biochemistry, The Ohio State University, Columbus OH 43210 | |
| Rachelle Gaudet | PI | Harvard University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/363/RG001_05_02_2_###.img
Images:
1 - 110
Beam:
(152.93, 158.74) -> (152.93, 158.81)
Distance:
400.0 -> 400.1
Spacegroup:
P 6
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.85 | 7.73 | 2.85 |
| Low resolution limit | 52.48 | 52.49 | 2.9 |
| Completeness | 99.6 | 97.9 | 99.9 |
| Multiplicity | 7.0 | 7.0 | 7.1 |
| I/sigma | 12.7 | 42.9 | 1.0 |
| Rmerge | 0.121 | 0.029 | 1.89 |
| CC half | 0.998 | 0.999 | 0.332 |
| Anomalous completeness | 94.5 | 95.6 | 93.1 |
| Anomalous multiplicity | 3.7 | 3.7 | 3.7 |
| Cell | 105.23 | 105.23 | 192.59 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/363/RG001_05_02_2_###.img
Images:
1 - 110
Beam:
(152.93, 158.74) -> (152.93, 158.81)
Distance:
400.0 -> 400.02
Spacegroup:
P 6
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.86 | 7.76 | 2.86 |
| Low resolution limit | 52.48 | 52.49 | 2.91 |
| Completeness | 99.6 | 97.8 | 99.9 |
| Multiplicity | 7.0 | 7.0 | 7.1 |
| I/sigma | 12.8 | 43.0 | 1.0 |
| Rmerge | 0.12 | 0.029 | 1.717 |
| CC half | 0.998 | 0.999 | 0.321 |
| Anomalous completeness | 94.5 | 95.6 | 93.1 |
| Anomalous multiplicity | 3.7 | 3.7 | 3.7 |
| Cell | 105.23 | 105.23 | 192.59 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/363/RG001_05_02_2_###.img
Images:
1 - 110
Beam:
(152.93, 158.74) -> (152.93, 158.79)
Distance:
400.0 -> 399.9
Spacegroup:
P 6
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.83 | 7.68 | 2.83 |
| Low resolution limit | 91.15 | 91.2 | 2.88 |
| Completeness | 99.6 | 97.8 | 99.9 |
| Multiplicity | 7.0 | 7.1 | 6.8 |
| I/sigma | 13.5 | 57.6 | 1.0 |
| Rmerge | 0.136 | 0.036 | 1.652 |
| CC half | 0.995 | 0.997 | 0.37 |
| Anomalous completeness | 94.6 | 95.9 | 93.7 |
| Anomalous multiplicity | 3.6 | 3.6 | 3.6 |
| Cell | 105.252 | 105.252 | 192.61 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
