X-Ray Diffraction data from Methyltransferase domain of EvdMO1 crystallized with 2 mM SAH, source of structure

dataset logo thumbnail

Data DOI: 10.15785/SBGRID/355 | ID: 355

Iverson Laboratory, Vanderbilt University

Release Date: Nov. 19, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/355

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/355 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/355 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/355 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/355 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 355 ; shasum -c files.sha'

Storage requirements: 3.8G

Biological Sample:

Methyltransferase domain of EvdMO1 crystallized with 2 mM SAH

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

APS LS-CAT 21-ID-F

Data Creation Date:

April 9, 2016

Related Datasets:

None


Cite this Dataset

McCulloch, KM; Berndt, S; Chen, Q; Loukachevitch, LV; Perry, NA; Starbird, CA; Yamakawa, I; Iverson, TM. 2018. "X-Ray Diffraction data for: Methyltransferase domain of EvdMO1 crystallized with 2 mM SAH.", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/355.

Download Citation

Dataset Description

X-ray diffraction data for the methyltransferase domain of EvdMO1 (EvdMdO1) to 1.15 A resolution.

Project Members

Name Additional Roles Affiliation While Working on the Project
Kathryn M McCullochDepositorVanderbilt University
Sandra BerndtData CollectorVanderbilt University
Qiuyan ChenData CollectorVanderbilt University
Lioudmila V LoukachevitchData CollectorVanderbilt University
Nicole A PerryData CollectorVanderbilt University
Chrystal A StarbirdData CollectorVanderbilt University
Izumi YamakawaData CollectorVanderbilt University
Tina M IversonData Collector, PIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/355/methyltrans.###

Images:

1 - 215

Beam:

(112.33, 112.14) -> (112.33, 112.84)

Distance:

100.0 -> 100.41

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.08 2.93 1.08
Low resolution limit 33.15 33.16 1.1
Completeness 90.2 97.5 44.3
Multiplicity 4.1 4.2 2.6
I/sigma 12.3 33.6 0.9
Rmerge 0.043 0.028 0.878
CC half 0.997 0.994 0.431
Anomalous completeness 79.1 90.5 32.5
Anomalous multiplicity 2.2 2.2 2.2
Cell 51.42 41.27 56.46 90.0 99.8 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/355/methyltrans.###

Images:

1 - 215

Beam:

(112.33, 112.14) -> (112.33, 112.85)

Distance:

100.0 -> 100.4

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.08 2.93 1.08
Low resolution limit 41.27 41.3 1.1
Completeness 90.2 97.8 44.3
Multiplicity 4.1 4.2 2.6
I/sigma 11.9 32.0 0.9
Rmerge 0.044 0.03 0.877
CC half 0.998 0.996 0.429
Anomalous completeness 79.5 91.9 32.5
Anomalous multiplicity 2.2 2.2 2.2
Cell 51.42 41.27 56.46 90.0 99.8 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/355/methyltrans.###

Images:

1 - 215

Beam:

(112.33, 112.14) -> (112.33, 112.91)

Distance:

100.0 -> 100.4

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.07 2.9 1.07
Low resolution limit 50.67 50.73 1.09
Completeness 88.2 97.0 35.5
Multiplicity 4.2 4.3 2.4
I/sigma 8.9 20.0 0.9
Rmerge 0.071 0.054 0.896
CC half 0.995 0.99 0.573
Anomalous completeness 78.9 95.8 25.3
Anomalous multiplicity 2.2 2.2 2.2
Cell 51.42 41.27 56.453 90.0 99.789 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.