Data DOI: 10.15785/SBGRID/340 | ID: 340
Publication DOI: 10.1172/JCI81603
5IWL Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 2 Aug 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/340
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/340 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/340 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/340 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/340 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 340 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
CD47 ectodomain with diabody 5F9
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
beamline 7-1, SSRL, Stanford, CA
Data Creation Date:
3 Apr 2015
Related Datasets:
None
Jude, KM; Wu, D; Garcia, K. 2016. "X-Ray Diffraction data for: CD47 ectodomain with diabody 5F9. PDB Code 5IWL", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/340.
native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Depositor | Stanford University |
| Di Wu | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
processed with HKL2000
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.12708
Sweep:
SWEEP2
Files:
/programs/datagrid/340/5F9B8_1_#####.img
Images:
1 - 90
Beam:
(157.5, 157.5) -> (157.5, 157.35)
Distance:
350.0 -> 349.69
Spacegroup:
P 3 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.83 | 7.67 | 2.83 |
| Low resolution limit | 48.02 | 48.03 | 2.88 |
| Completeness | 95.9 | 90.5 | 97.9 |
| Multiplicity | 11.2 | 11.1 | 9.1 |
| I/sigma | 10.4 | 35.4 | 1.1 |
| Rmerge | 0.23 | 0.043 | 1.782 |
| CC half | 0.995 | 1.0 | 0.434 |
| Anomalous completeness | 97.1 | 95.8 | 98.6 |
| Anomalous multiplicity | 5.9 | 5.9 | 5.9 |
| Cell | 103.22 | 103.22 | 131.09 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.12708
Sweep:
SWEEP2
Files:
/programs/datagrid/340/5F9B8_1_#####.img
Images:
1 - 90
Beam:
(157.5, 157.5) -> (157.5, 157.35)
Distance:
350.0 -> 349.78
Spacegroup:
P 3 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.83 | 7.67 | 2.83 |
| Low resolution limit | 52.85 | 52.86 | 2.88 |
| Completeness | 95.9 | 90.5 | 97.9 |
| Multiplicity | 11.3 | 11.1 | 10.2 |
| I/sigma | 10.4 | 35.5 | 1.2 |
| Rmerge | 0.231 | 0.043 | 1.843 |
| CC half | 0.995 | 1.0 | 0.42 |
| Anomalous completeness | 97.1 | 95.7 | 98.7 |
| Anomalous multiplicity | 6.0 | 6.0 | 6.0 |
| Cell | 103.21 | 103.21 | 131.08 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.12708
Sweep:
SWEEP2
Files:
/programs/datagrid/340/5F9B8_1_#####.img
Images:
1 - 90
Beam:
(157.5, 157.5) -> (157.5, 157.33)
Distance:
350.0 -> 349.69
Spacegroup:
P 3 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.73 | 7.4 | 2.73 |
| Low resolution limit | 52.81 | 52.82 | 2.78 |
| Completeness | 96.3 | 91.0 | 100.0 |
| Multiplicity | 11.4 | 11.1 | 11.5 |
| I/sigma | 11.2 | 51.9 | 0.6 |
| Rmerge | 0.178 | 0.034 | 2.326 |
| CC half | 0.996 | 0.999 | 0.347 |
| Anomalous completeness | 97.2 | 95.7 | 99.4 |
| Anomalous multiplicity | 6.0 | 6.0 | 6.0 |
| Cell | 103.129 | 103.129 | 65.483 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
