Data DOI: 10.15785/SBGRID/339 | ID: 339
Publication DOI: 10.1126/science.aaa5026
4XT1 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 2 Aug 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/339
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/339 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/339 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/339 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/339 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 339 ; shasum -c files.sha'
Storage requirements: 15G
Biological Sample:
nanobody-bound viral GPCR bound to human chemokine CX3CL1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
23 ID-D, GM/CA, APS, Chicago, IL
Data Creation Date:
13 Oct 2014
Related Datasets:
None
Jude, KM; Burg, JS; Garcia, K. 2016. "X-Ray Diffraction data for: nanobody-bound viral GPCR bound to human chemokine CX3CL1. PDB Code 4XT1", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/339.
native datasets
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Data Collector, Depositor | Stanford University |
| John S Burg | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
datasets D8-27-42-19_1 (frames 1-30), D1-47-48-24_1 (frames 1-30), D1-73-43_1 (frames 1-72), D1-81-28-27_1 (frames 1-10), and D1-30-24-8_1 (frames 1-28) were processed and merged in HKL2000 to 2.75 Å resolution
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0332
Sweep:
SWEEP4
Files:
/programs/datagrid/339/D8-27-42-19_1.####
Images:
1 - 90
Beam:
(150.51, 150.0) -> (150.51, 150.02)
Distance:
350.0 -> 349.71
Spacegroup:
I 4
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.82 | 7.65 | 2.82 |
| Low resolution limit | 57.23 | 57.24 | 2.87 |
| Completeness | 99.6 | 100.0 | 94.2 |
| Multiplicity | 18.3 | 19.2 | 3.5 |
| I/sigma | 11.9 | 38.7 | 0.8 |
| Rmerge | 0.243 | 0.067 | 1.436 |
| CC half | 0.991 | 0.992 | 0.306 |
| Anomalous completeness | 98.3 | 99.8 | 76.3 |
| Anomalous multiplicity | 9.3 | 9.3 | 9.3 |
| Cell | 80.94 | 80.94 | 230.62 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0332
Sweep:
SWEEP4
Files:
/programs/datagrid/339/D8-27-42-19_1.####
Images:
1 - 90
Beam:
(150.51, 150.0) -> (150.51, 150.02)
Distance:
350.0 -> 350.35
Spacegroup:
I 4
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.82 | 7.65 | 2.82 |
| Low resolution limit | 76.37 | 76.4 | 2.87 |
| Completeness | 99.6 | 100.0 | 94.2 |
| Multiplicity | 18.2 | 19.3 | 3.5 |
| I/sigma | 11.9 | 38.8 | 0.8 |
| Rmerge | 0.24 | 0.068 | 1.437 |
| CC half | 0.991 | 0.99 | 0.31 |
| Anomalous completeness | 98.3 | 99.7 | 76.4 |
| Anomalous multiplicity | 9.2 | 9.2 | 9.2 |
| Cell | 80.94 | 80.94 | 230.62 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0332
Sweep:
SWEEP4
Files:
/programs/datagrid/339/D8-27-42-19_1.####
Images:
1 - 90
Beam:
(150.51, 150.0) -> (150.51, 150.11)
Distance:
350.0 -> 348.06
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.0 | 8.14 | 3.0 |
| Low resolution limit | 115.06 | 115.15 | 3.05 |
| Completeness | 99.8 | 100.0 | 96.6 |
| Multiplicity | 10.2 | 10.1 | 10.0 |
| I/sigma | 8.9 | 34.1 | 1.7 |
| Rmerge | 0.248 | 0.077 | 1.896 |
| CC half | 0.989 | 0.978 | 0.153 |
| Anomalous completeness | 99.8 | 99.9 | 96.4 |
| Anomalous multiplicity | 5.2 | 5.2 | 5.2 |
| Cell | 113.962 | 230.127 | 80.628 | 90.0 | 134.998 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
