X-Ray Diffraction data from Stenotrophomonas maltophilia phosphate binding protein, source of 5J1D structure

Data DOI: 10.15785/SBGRID/337 | ID: 337

Publication DOI: 10.1107/S2059798316012419

5J1D Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Murthy Laboratory, Indian Institute of Science

Release Date: 29 Jul 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/337

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/337 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/337 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/337 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/337 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 337 ; shasum -c files.sha'

Storage requirements: 1.4G

Biological Sample:

Stenotrophomonas maltophilia phosphate binding protein

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

home source

Data Creation Date:

23 Mar 2011

Related Datasets:

None


Cite this Dataset

Hatti, K; Gulati, A; Murthy, M; Srinivasan, N; Murthy, M. 2016. "X-Ray Diffraction data for: Stenotrophomonas maltophilia phosphate binding protein. PDB Code 5J1D", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/337.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kaushik HattiDepositorIndian Institute of Science
Ashutosh GulatiData CollectorIndian Institute of Science
MRN MurthyIndian Institute of Science
Narayanaswamy SrinivasanIndian Institute of Science
M.R.N. MurthyPIIndian Institute of Science

Reprocessing Instructions

None

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/337/hg_acetate_dc_###.mar2300

Images:

1 - 479

Beam:

(172.5, 172.5) -> (172.5, 173.12)

Distance:

150.0 -> 149.54

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.87 5.06 1.87
Low resolution limit 23.52 23.52 1.9
Completeness 99.8 99.5 100.0
Multiplicity 4.8 4.9 4.5
I/sigma 19.7 40.4 6.4
Rmerge 0.055 0.023 0.204
CC half 0.998 0.999 0.948
Anomalous completeness 96.7 96.5 94.3
Anomalous multiplicity 2.5 2.5 2.5
Cell 37.77 78.05 56.33 90.0 102.37 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/337/hg_acetate_dc_###.mar2300

Images:

1 - 479

Beam:

(172.5, 172.5) -> (172.5, 173.12)

Distance:

150.0 -> 149.66

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.87 5.07 1.87
Low resolution limit 27.51 27.51 1.9
Completeness 99.8 99.3 100.0
Multiplicity 4.8 4.9 4.5
I/sigma 19.6 40.3 6.4
Rmerge 0.055 0.023 0.204
CC half 0.998 0.999 0.952
Anomalous completeness 96.7 96.4 94.1
Anomalous multiplicity 2.5 2.5 2.5
Cell 37.77 78.05 56.33 90.0 102.37 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/337/hg_acetate_dc_###.mar2300

Images:

1 - 479

Beam:

(172.5, 172.5) -> (172.5, 173.13)

Distance:

150.0 -> 149.61

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.8 4.88 1.8
Low resolution limit 31.33 31.34 1.83
Completeness 96.5 100.0 66.3
Multiplicity 4.8 5.0 3.2
I/sigma 12.0 26.3 -0.3
Rmerge 0.087 0.036 -0.367
CC half 0.961 0.996 0.724
Anomalous completeness 94.9 100.0 54.6
Anomalous multiplicity 2.5 2.5 2.5
Cell 37.762 78.016 56.319 90.0 102.362 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.