X-Ray Diffraction data from Stenotrophomonas maltophilia phosphate binding protein, source of 5J1D structure

Data DOI: 10.15785/SBGRID/337 | ID: 337

Publication DOI: 10.1107/S2059798316012419

5J1D Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Murthy Laboratory, Indian Institute of Science

Release Date: July 29, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/337

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/337 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/337 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/337 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/337 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 337 ; shasum -c files.sha'

Storage requirements: 1.4G

Biological Sample:

Stenotrophomonas maltophilia phosphate binding protein

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

home source

Data Creation Date:

March 23, 2011

Related Datasets:

None


Cite this Dataset

Hatti, K; Gulati, A; Murthy, M; Srinivasan, N; Murthy, M. 2016. "X-Ray Diffraction data for: Stenotrophomonas maltophilia phosphate binding protein. PDB Code 5J1D", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/337.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kaushik HattiDepositorIndian Institute of Science
Ashutosh GulatiData CollectorIndian Institute of Science
MRN MurthyIndian Institute of Science
Narayanaswamy SrinivasanIndian Institute of Science
M.R.N. MurthyPIIndian Institute of Science

Reprocessing Instructions

None

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP2

Files:

/programs/datagrid/337/hg_acetate_dc_###.mar2300

Images:

55 - 479

Beam:

(172.5, 172.5) -> (172.5, 172.22)

Distance:

150.0 -> 149.94

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.87 5.06 1.87
Low resolution limit 26.02 26.03 1.9
Completeness 100.0 100.0 99.6
Multiplicity 4.9 5.0 4.5
I/sigma 14.1 23.8 4.9
Rmerge 0.074 0.029 0.247
CC half 0.996 0.996 0.915
Anomalous completeness 99.5 100.0 94.0
Anomalous multiplicity 2.5 2.5 2.5
Cell 37.788 78.075 56.395 90.0 102.366 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP2

Files:

/programs/datagrid/337/hg_acetate_dc_###.mar2300

Images:

55 - 479

Beam:

(172.5, 172.5) -> (172.5, 173.12)

Distance:

150.0 -> 149.37

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.87 5.07 1.87
Low resolution limit 26.82 26.82 1.9
Completeness 99.8 99.4 99.9
Multiplicity 4.8 4.9 4.5
I/sigma 15.6 32.1 5.0
Rmerge 0.055 0.024 0.203
CC half 0.998 0.999 0.949
Anomalous completeness 96.9 96.5 93.5
Anomalous multiplicity 2.5 2.5 2.5
Cell 37.78 78.07 56.35 90.0 102.37 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP2

Files:

/programs/datagrid/337/hg_acetate_dc_###.mar2300

Images:

55 - 479

Beam:

(172.5, 172.5) -> (172.5, 173.12)

Distance:

150.0 -> 149.7

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.87 5.06 1.87
Low resolution limit 26.36 26.36 1.9
Completeness 99.8 99.4 99.9
Multiplicity 4.8 4.9 4.5
I/sigma 15.6 32.1 5.0
Rmerge 0.055 0.024 0.202
CC half 0.998 0.999 0.949
Anomalous completeness 96.9 96.6 93.7
Anomalous multiplicity 2.5 2.5 2.5
Cell 37.78 78.07 56.35 90.0 102.37 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP2

Files:

/programs/datagrid/337/hg_acetate_dc_###.mar2300

Images:

55 - 479

Beam:

(172.5, 172.5) -> (172.5, 173.12)

Distance:

150.0 -> 149.54

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.86 5.05 1.86
Low resolution limit 33.31 33.32 1.9
Completeness 99.9 100.0 96.2
Multiplicity 4.9 5.0 4.3
I/sigma 14.8 23.1 5.8
Rmerge 0.065 0.029 0.198
CC half 0.997 0.997 0.947
Anomalous completeness 99.1 100.0 87.9
Anomalous multiplicity 2.5 2.5 2.5
Cell 37.725 77.948 56.263 90.0 102.373 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.