Data DOI: 10.15785/SBGRID/324 | ID: 324
Publication DOI: 10.1038/NCHEM.2744
5L6N Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Pereira Laboratory, IBMC/i3S, Universidade do Porto
Release Date: 24 Mar 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/324
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/324 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/324 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/324 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/324 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 324 ; shasum -c files.sha'
Storage requirements: 16G
Biological Sample:
Human thrombin-sulfated madanin complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ESRF ID29
Data Creation Date:
22 Mar 2017
Related Datasets:
None
Ripoll-Rozada, J; Pereira, PJB. 2017. "X-Ray Diffraction data for: Human thrombin-sulfated madanin complex. PDB Code 5L6N", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/324.
X-ray Diffraction data from Human thrombin in complex with a disulfated madanin-1 fragment, source of 5L6N structure
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Pedro JB Pereira | Data Collector, Depositor | IBMC-Instituto de Biologia Molecular e Celular, Universidade do Porto |
| Jorge Ripoll-Rozada | IBMC-Instituto de Biologia Molecular e Celular, Universidade do Porto | |
| Pedro Pereira | PI | Universidade do Porto |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96863
Sweep:
SWEEP1
Files:
/programs/datagrid/324/af6556_w1_2_####.cbf
Images:
1 - 2700
Beam:
(215.81, 211.95) -> (215.81, 212.33)
Distance:
300.02 -> 300.4
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.6 | 4.34 | 1.6 |
| Low resolution limit | 44.55 | 44.57 | 1.63 |
| Completeness | 99.8 | 99.4 | 100.0 |
| Multiplicity | 4.9 | 4.6 | 5.1 |
| I/sigma | 11.8 | 37.7 | 0.9 |
| Rmerge | 0.052 | 0.027 | 1.343 |
| CC half | 0.999 | 0.998 | 0.347 |
| Anomalous completeness | 96.8 | 94.8 | 98.6 |
| Anomalous multiplicity | 2.6 | 2.6 | 2.6 |
| Cell | 44.55 | 80.25 | 91.39 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96863
Sweep:
SWEEP1
Files:
/programs/datagrid/324/af6556_w1_2_####.cbf
Images:
1 - 2700
Beam:
(215.81, 211.95) -> (215.81, 212.34)
Distance:
300.02 -> 299.92
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.6 | 4.34 | 1.6 |
| Low resolution limit | 44.55 | 44.57 | 1.63 |
| Completeness | 99.8 | 99.5 | 100.0 |
| Multiplicity | 4.9 | 4.6 | 5.1 |
| I/sigma | 11.8 | 37.7 | 0.9 |
| Rmerge | 0.052 | 0.027 | 1.347 |
| CC half | 0.999 | 0.998 | 0.345 |
| Anomalous completeness | 96.8 | 94.8 | 98.6 |
| Anomalous multiplicity | 2.6 | 2.6 | 2.6 |
| Cell | 44.55 | 80.25 | 91.39 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96863
Sweep:
SWEEP1
Files:
/programs/datagrid/324/af6556_w1_2_####.cbf
Images:
1 - 2700
Beam:
(215.81, 211.95) -> (215.81, 212.31)
Distance:
300.02 -> 300.04
Spacegroup:
P 2 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.54 | 4.18 | 1.54 |
| Low resolution limit | 60.25 | 60.3 | 1.57 |
| Completeness | 99.7 | 100.0 | 96.1 |
| Multiplicity | 4.9 | 4.7 | 4.0 |
| I/sigma | 11.9 | 54.4 | 0.5 |
| Rmerge | 0.065 | 0.034 | 1.207 |
| CC half | 0.998 | 0.997 | 0.382 |
| Anomalous completeness | 97.5 | 97.9 | 92.3 |
| Anomalous multiplicity | 2.6 | 2.6 | 2.6 |
| Cell | 44.519 | 80.174 | 91.332 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
