X-Ray Diffraction data from Crystal structure of a LonA fragment containing the 3-helix bundle and the AAA-alpha/beta domain, source of 4YPN structure

Data DOI: 10.15785/SBGRID/320 | ID: 320

Publication DOI: 10.1016/j.str.2016.03.001

4YPN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Chang Laboratory, Academia Sinica

Release Date: May 31, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/320

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/320 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/320 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/320 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/320 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 320 ; shasum -c files.sha'

Storage requirements: 430M

Biological Sample:

Crystal structure of a LonA fragment containing the 3-helix bundle and the AAA-alpha/beta domain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BL-1A, PHOTON FACTORY

Data Creation Date:

Jan. 27, 2013

Related Datasets:

None


Cite this Dataset

Su, M; Lin, C; Chang, C. 2016. "X-Ray Diffraction data for: Crystal structure of a LonA fragment containing the 3-helix bundle and the AAA-alpha/beta domain. PDB Code 4YPN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/320.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Ming-Yuan SuDepositorAcademia Sinica
Chien-Chu LinData CollectorAcademia Sinica
Chung-I ChangPIAcademia Sinica

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/320/collect_Mta202_492_3_1_#####.cbf

Images:

1 - 180

Beam:

(154.28, 122.64) -> (154.28, 122.65)

Distance:

149.9 -> 150.39

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.85 5.02 1.85
Low resolution limit 44.97 44.98 1.88
Completeness 100.0 100.0 100.0
Multiplicity 5.7 5.4 5.4
I/sigma 8.1 17.8 0.8
Rmerge 0.125 0.039 2.726
CC half 0.994 0.991 0.26
Anomalous completeness 99.4 100.0 99.1
Anomalous multiplicity 3.1 3.1 3.1
Cell 69.161 59.186 63.713 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/320/collect_Mta202_492_3_1_#####.cbf

Images:

1 - 180

Beam:

(154.28, 122.64) -> (154.28, 122.52)

Distance:

149.9 -> 150.54

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.93 5.23 1.93
Low resolution limit 31.98 31.98 1.96
Completeness 100.0 100.0 100.0
Multiplicity 6.3 5.5 6.5
I/sigma 12.2 30.2 1.2
Rmerge 0.081 0.036 1.652
CC half 0.998 0.999 0.457
Anomalous completeness 98.4 98.0 99.7
Anomalous multiplicity 3.4 3.4 3.4
Cell 69.41 59.45 63.96 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/320/collect_Mta202_492_3_1_#####.cbf

Images:

1 - 180

Beam:

(154.28, 122.64) -> (154.28, 122.52)

Distance:

149.9 -> 150.48

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.57 6.97 2.57
Low resolution limit 43.54 43.55 2.61
Completeness 100.0 100.0 100.0
Multiplicity 6.1 5.4 6.4
I/sigma 22.2 32.4 11.9
Rmerge 0.053 0.033 0.162
CC half 0.998 0.999 0.984
Anomalous completeness 97.8 98.1 97.7
Anomalous multiplicity 3.3 3.3 3.3
Cell 69.41 59.45 63.96 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/320/collect_Mta202_492_3_1_#####.cbf

Images:

1 - 180

Beam:

(154.28, 122.64) -> (154.28, 122.53)

Distance:

149.9 -> 151.01

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.86 5.05 1.86
Low resolution limit 47.08 47.1 1.89
Completeness 100.0 100.0 99.8
Multiplicity 6.1 5.7 5.7
I/sigma 6.7 13.2 1.3
Rmerge 0.12 0.043 1.411
CC half 0.994 0.99 0.297
Anomalous completeness 99.8 99.9 99.3
Anomalous multiplicity 3.3 3.3 3.3
Cell 69.503 59.508 64.003 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.