Data DOI: 10.15785/SBGRID/320 | ID: 320
Publication DOI: 10.1016/j.str.2016.03.001
4YPN Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Chang Laboratory, Academia Sinica
Release Date: 31 May 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/320
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/320 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/320 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/320 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/320 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 320 ; shasum -c files.sha'
Storage requirements: 430M
Biological Sample:
Crystal structure of a LonA fragment containing the 3-helix bundle and the AAA-alpha/beta domain
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
BL-1A, PHOTON FACTORY
Data Creation Date:
27 Jan 2013
Related Datasets:
None
Su, M; Lin, C; Chang, C. 2016. "X-Ray Diffraction data for: Crystal structure of a LonA fragment containing the 3-helix bundle and the AAA-alpha/beta domain. PDB Code 4YPN", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/320.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Ming-Yuan Su | Depositor | Academia Sinica |
| Chien-Chu Lin | Data Collector | Academia Sinica |
| Chung-I Chang | PI | Academia Sinica |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.1
Sweep:
SWEEP1
Files:
/programs/datagrid/320/collect_Mta202_492_3_1_#####.cbf
Images:
1 - 180
Beam:
(154.28, 122.64) -> (154.28, 122.52)
Distance:
149.9 -> 150.44
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.07 | 1.87 |
| Low resolution limit | 36.88 | 36.89 | 1.9 |
| Completeness | 100.0 | 100.0 | 99.9 |
| Multiplicity | 6.3 | 5.6 | 6.1 |
| I/sigma | 11.2 | 29.4 | 0.8 |
| Rmerge | 0.09 | 0.038 | 2.541 |
| CC half | 0.998 | 0.999 | 0.302 |
| Anomalous completeness | 98.9 | 97.9 | 99.9 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 69.4 | 59.43 | 63.95 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.1
Sweep:
SWEEP1
Files:
/programs/datagrid/320/collect_Mta202_492_3_1_#####.cbf
Images:
1 - 180
Beam:
(154.28, 122.64) -> (154.28, 122.52)
Distance:
149.9 -> 150.52
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.07 | 1.87 |
| Low resolution limit | 36.88 | 36.89 | 1.9 |
| Completeness | 100.0 | 100.0 | 99.9 |
| Multiplicity | 6.3 | 5.6 | 6.1 |
| I/sigma | 11.3 | 29.5 | 0.8 |
| Rmerge | 0.09 | 0.038 | 2.536 |
| CC half | 0.998 | 0.999 | 0.284 |
| Anomalous completeness | 98.9 | 97.8 | 99.9 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 69.4 | 59.43 | 63.95 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.1
Sweep:
SWEEP1
Files:
/programs/datagrid/320/collect_Mta202_492_3_1_#####.cbf
Images:
1 - 180
Beam:
(154.28, 122.64) -> (154.28, 122.53)
Distance:
149.9 -> 150.95
Spacegroup:
P 21 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.08 | 1.87 |
| Low resolution limit | 47.11 | 47.12 | 1.9 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 6.3 | 5.8 | 5.7 |
| I/sigma | 5.1 | 27.5 | 0.3 |
| Rmerge | 0.129 | 0.052 | 0.996 |
| CC half | 0.995 | 0.997 | 0.132 |
| Anomalous completeness | 99.9 | 100.0 | 99.7 |
| Anomalous multiplicity | 3.3 | 3.3 | 3.3 |
| Cell | 59.544 | 64.041 | 69.542 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
