X-Ray Diffraction data from Structural Insights into the Allosteric Operation of the Lon AAA+ Protease , source of 4YPL structure

Data DOI: 10.15785/SBGRID/319 | ID: 319

Publication DOI: 10.1016/j.str.2016.03.001

4YPL Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Chang Laboratory, Academia Sinica

Release Date: May 31, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/319

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/319 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/319 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/319 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/319 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 319 ; shasum -c files.sha'

Storage requirements: 4.7G

Biological Sample:

Structural Insights into the Allosteric Operation of the Lon AAA+ Protease

Dataset Type:

X-Ray Diffraction

Subject Composition:

DNA, Ligand, Protein

Collection Facility:

BL44XU, SPring8

Data Creation Date:

Nov. 22, 2014

Related Datasets:

None


Cite this Dataset

Su, M; Lin, C; Chang, C. 2016. "X-Ray Diffraction data for: Structural Insights into the Allosteric Operation of the Lon AAA+ Protease . PDB Code 4YPL", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/319.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Ming-Yuan SuDepositorAcademia Sinica
Chien-Chu LinData CollectorAcademia Sinica
Chung-I ChangPIAcademia Sinica

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9

Sweep:

SWEEP1

Files:

/programs/datagrid/319/SP21_######.img

Images:

1 - 150

Beam:

(150.0, 150.0) -> (150.0, 149.91)

Distance:

482.0 -> 483.58

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.38 9.17 3.38
Low resolution limit 135.66 135.77 3.44
Completeness 86.9 83.1 85.3
Multiplicity 1.8 1.9 1.7
I/sigma 1.9 4.1 0.7
Rmerge 0.209 0.0 0.25
CC half 0.901 0.975 0.354
Anomalous completeness 67.0 73.4 61.3
Anomalous multiplicity 1.0 1.0 1.0
Cell 135.664 168.573 169.221 89.811 89.927 89.843

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9

Sweep:

SWEEP1

Files:

/programs/datagrid/319/SP21_######.img

Images:

1 - 150

Beam:

(150.0, 150.0) -> (150.0, 149.8)

Distance:

482.0 -> 480.48

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.11 8.43 3.11
Low resolution limit 52.1 52.11 3.16
Completeness 99.8 98.6 99.9
Multiplicity 6.1 5.5 6.3
I/sigma 7.6 21.0 1.1
Rmerge 0.202 0.051 1.787
CC half 0.993 0.997 0.533
Anomalous completeness 99.1 98.0 99.8
Anomalous multiplicity 3.2 3.2 3.2
Cell 169.29 169.33 135.49 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9

Sweep:

SWEEP1

Files:

/programs/datagrid/319/SP21_######.img

Images:

1 - 150

Beam:

(150.0, 150.0) -> (150.0, 149.8)

Distance:

482.0 -> 483.29

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.11 8.44 3.11
Low resolution limit 66.09 66.11 3.16
Completeness 99.8 98.4 100.0
Multiplicity 6.1 5.5 6.3
I/sigma 7.6 20.9 1.1
Rmerge 0.202 0.051 1.78
CC half 0.993 0.997 0.537
Anomalous completeness 99.1 97.9 99.9
Anomalous multiplicity 3.2 3.2 3.2
Cell 169.28 169.33 135.49 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9

Sweep:

SWEEP1

Files:

/programs/datagrid/319/SP21_######.img

Images:

1 - 150

Beam:

(150.0, 150.0) -> (150.0, 149.9)

Distance:

482.0 -> 483.95

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.15 8.54 3.15
Low resolution limit 67.42 67.43 3.2
Completeness 99.6 98.3 93.7
Multiplicity 6.2 5.8 6.2
I/sigma 4.9 11.3 1.2
Rmerge 0.251 0.089 2.546
CC half 0.951 0.913 0.663
Anomalous completeness 99.5 98.8 93.6
Anomalous multiplicity 3.2 3.2 3.2
Cell 168.622 168.76 134.832 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.