Data DOI: 10.15785/SBGRID/314 | ID: 314
Publication DOI: 10.1016/j.str.2016.03.003
4YPM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Chang Laboratory, Academia Sinica
Release Date: 31 May 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/314
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/314 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/314 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/314 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/314 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 314 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
Crystal structure of a LonA protease domain in complex with bortezomib
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
BL15A, NSRRC
Data Creation Date:
18 Mar 2014
Related Datasets:
None
Su, M; Lin, C; Chang, C. 2016. "X-Ray Diffraction data for: Crystal structure of a LonA protease domain in complex with bortezomib. PDB Code 4YPM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/314.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Ming-Yuan Su | Depositor | Academia Sinica |
| Chien-Chu Lin | Data Collector | Academia Sinica |
| Chung-I Chang | PI | Academia Sinica |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/314/MtAAAP_bortezomib_7_3_11_###.mccd
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 150.05)
Distance:
220.0 -> 219.78
Spacegroup:
P 6 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.57 | 4.26 | 1.57 |
| Low resolution limit | 25.04 | 25.05 | 1.6 |
| Completeness | 99.9 | 99.9 | 99.5 |
| Multiplicity | 20.1 | 19.4 | 10.8 |
| I/sigma | 18.9 | 77.4 | 0.9 |
| Rmerge | 0.122 | 0.027 | 2.46 |
| CC half | 0.999 | 1.0 | 0.34 |
| Anomalous completeness | 100.0 | 100.0 | 99.8 |
| Anomalous multiplicity | 10.6 | 10.6 | 10.6 |
| Cell | 122.34 | 122.34 | 103.1 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/314/MtAAAP_bortezomib_7_3_11_###.mccd
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 150.05)
Distance:
220.0 -> 219.83
Spacegroup:
P 6 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.57 | 4.26 | 1.57 |
| Low resolution limit | 26.49 | 26.49 | 1.6 |
| Completeness | 99.9 | 99.9 | 99.5 |
| Multiplicity | 20.1 | 19.4 | 10.8 |
| I/sigma | 18.9 | 77.3 | 0.9 |
| Rmerge | 0.122 | 0.027 | 2.451 |
| CC half | 0.999 | 1.0 | 0.338 |
| Anomalous completeness | 100.0 | 100.0 | 99.8 |
| Anomalous multiplicity | 10.6 | 10.6 | 10.6 |
| Cell | 122.34 | 122.34 | 103.1 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0
Sweep:
SWEEP1
Files:
/programs/datagrid/314/MtAAAP_bortezomib_7_3_11_###.mccd
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 150.15)
Distance:
220.0 -> 219.89
Spacegroup:
P 6 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.34 | 3.64 | 1.34 |
| Low resolution limit | 34.4 | 34.41 | 1.36 |
| Completeness | 86.9 | 100.0 | 12.2 |
| Multiplicity | 16.2 | 20.7 | 3.4 |
| I/sigma | 12.9 | 67.0 | 20.6 |
| Rmerge | 0.147 | 0.041 | 0.199 |
| CC half | 0.89 | 0.997 | 0.807 |
| Anomalous completeness | 86.9 | 100.0 | 11.2 |
| Anomalous multiplicity | 8.5 | 8.5 | 8.5 |
| Cell | 122.427 | 122.427 | 103.187 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
