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X-Ray Diffraction data from succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18), source of 5DW6 structure

Data DOI: 10.15785/SBGRID/310 | ID: 310

Publication DOI: 10.3389/fchem.2016.00023

5DW6 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Kappock Laboratory, Purdue University

Release Date: May 31, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/310

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/310 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/310 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/310 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/310 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 310 ; shasum -c files.sha'

Storage requirements: 8.8G

Biological Sample:

succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

beamline 21-ID-F, LS-CAT, APS, Chicago, IL

Data Creation Date:

July 12, 2015

Related Datasets:

None


Cite this Dataset

Murphy, JR.; Kappock, T. 2016. "X-Ray Diffraction data for: succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18). PDB Code 5DW6", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/310.

Download Citation

Dataset Description

Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate and the CoA analogue 3'-phosphoadenosine 5'-(O-(N-propyl-R-pantothenamide))pyrophosphate (MX)

Project Members

Name Additional Roles Affiliation While Working on the Project
Jesse R. MurphyPurdue University
T. Joseph KappockData Collector, Depositor, PIPurdue University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/310/122MA_2_1_9.###

Images:

1 - 500

Beam:

(112.36, 112.04) -> (112.36, 112.71)

Distance:

150.0 -> 150.35

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.4 3.8 1.4
Low resolution limit 50.18 50.22 1.42
Completeness 99.3 100.0 90.7
Multiplicity 7.2 7.5 3.4
I/sigma 14.4 40.8 0.8
Rmerge 0.058 0.031 1.292
CC half 0.999 0.999 0.308
Anomalous completeness 97.8 99.8 79.6
Anomalous multiplicity 3.7 3.7 3.7
Cell 67.47 110.49 120.03 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/310/122MA_2_1_9.###

Images:

1 - 500

Beam:

(112.36, 112.04) -> (112.36, 112.72)

Distance:

150.0 -> 150.55

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.4 3.8 1.4
Low resolution limit 60.01 60.07 1.42
Completeness 99.3 100.0 90.7
Multiplicity 7.2 7.5 3.4
I/sigma 14.4 40.8 0.8
Rmerge 0.058 0.031 1.292
CC half 0.999 0.999 0.307
Anomalous completeness 97.8 99.8 79.6
Anomalous multiplicity 3.7 3.7 3.7
Cell 67.47 110.49 120.03 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/310/122MA_2_1_9.###

Images:

1 - 500

Beam:

(112.36, 112.04) -> (112.36, 112.79)

Distance:

150.0 -> 150.58

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.48 4.02 1.48
Low resolution limit 81.37 81.49 1.51
Completeness 99.9 100.0 97.9
Multiplicity 7.9 7.9 4.8
I/sigma 9.9 53.8 1.3
Rmerge 0.077 0.037 0.726
CC half 0.994 0.995 0.311
Anomalous completeness 99.7 100.0 95.3
Anomalous multiplicity 4.1 4.1 4.1
Cell 67.483 110.624 120.107 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.