X-Ray Diffraction data from BST-2/tetherin ectodomain, source of 3NI0 structure

Data DOI: 10.15785/SBGRID/28 | ID: 28

Publication DOI: 10.1074/jbc.M110.190538

3NI0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Brett Laboratory, Washington U. School of Medicine

Release Date: May 6, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/28

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/28 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/28 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/28 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/28 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 28 ; shasum -c files.sha'

Storage requirements: 1.5G

Biological Sample:

BST-2/tetherin ectodomain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALS 4.2.2

Data Creation Date:

July 3, 2009

Related Datasets:

None


Cite this Dataset

Brett, TJ; Brett, T. 2015. "X-Ray Diffraction data for: BST-2/tetherin ectodomain. PDB Code 3NI0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/28.

Download Citation

Dataset Description

1.6 Ang data

Project Members

Name Additional Roles Affiliation While Working on the Project
Thomas J BrettData Collector, DepositorWashington University School of Medicine
Tom BrettPIWashington U. School of Medicine

Reprocessing Instructions

Processed with HKL2000

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/28/tb21pt_1_###.img

Images:

1 - 180

Beam:

(77.73, 90.12) -> (77.73, 77.68)

Distance:

-97.0 -> 98.09

Spacegroup:

I 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.38 3.74 1.38
Low resolution limit 32.16 32.17 1.4
Completeness 97.1 100.0 78.2
Multiplicity 6.4 6.8 3.7
I/sigma 8.8 25.0 0.9
Rmerge 0.09 0.066 1.149
CC half 0.994 0.991 0.532
Anomalous completeness 96.0 100.0 72.8
Anomalous multiplicity 3.4 3.4 3.4
Cell 33.664 100.845 110.39 90.0 90.0 90.0

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/28/tb21pt_1_###.img

Images:

1 - 180

Beam:

(77.73, 90.12) -> (77.73, 89.78)

Distance:

-97.0 -> -82.71

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.73 12.27 4.73
Low resolution limit 24.05 24.05 4.81
Completeness 98.3 97.7 99.5
Multiplicity 3.4 3.4 3.4
I/sigma 0.3 0.0 0.3
Rmerge 0.806 0.916 0.835
CC half 0.279 0.589 0.369
Anomalous completeness 93.3 93.3 93.9
Anomalous multiplicity 1.8 1.8 1.8
Cell 149.951 121.9 47.18 90.0 104.888 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/28/tb21pt_1_###.img

Images:

1 - 180

Beam:

(77.73, 90.12) -> (77.73, 90.19)

Distance:

-97.0 -> -111.06

Spacegroup:

C 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.26 6.13 2.26
Low resolution limit 37.45 37.46 2.3
Completeness 96.0 98.5 40.8
Multiplicity 4.3 3.9 3.5
I/sigma 1.2 1.5 0.4
Rmerge 1.422 0.658 1.67
CC half 0.175 0.246 0.978
Anomalous completeness 85.4 84.2 31.2
Anomalous multiplicity 2.6 2.6 2.6
Cell 17.617 122.282 37.455 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.