Data DOI: 10.15785/SBGRID/242 | ID: 242
5EQ3 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Iverson Laboratory, Vanderbilt University
Release Date: 1 Apr 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/242
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/242 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/242 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/242 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/242 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 242 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
SrpA + Neu5Gc-Gal disaccharide
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
APS 21-IDG
Data Creation Date:
27 Jun 2015
Related Datasets:
None
Loukachevitch, LV; Iverson, TM. 2016. "X-Ray Diffraction data for: SrpA + Neu5Gc-Gal disaccharide. PDB Code 5EQ3", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/242.
data with bound ligand
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tina M Iverson | Depositor | Vanderbilt |
| Lioudmila V Loukachevitch | Data Collector | Vanderbilt |
| Tina Iverson | PI | Vanderbilt University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/242/srpasucarb_28.###
Images:
1 - 360
Beam:
(145.3, 155.51) -> (145.3, 155.6)
Distance:
270.0 -> 269.55
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.8 | 4.88 | 1.8 |
| Low resolution limit | 33.33 | 33.34 | 1.83 |
| Completeness | 98.3 | 99.6 | 80.6 |
| Multiplicity | 6.9 | 6.8 | 4.8 |
| I/sigma | 9.4 | 26.4 | 0.7 |
| Rmerge | 0.113 | 0.046 | 2.483 |
| CC half | 0.998 | 0.997 | 0.29 |
| Anomalous completeness | 97.2 | 97.7 | 78.4 |
| Anomalous multiplicity | 3.6 | 3.6 | 3.6 |
| Cell | 174.47 | 46.97 | 63.98 | 90.0 | 102.1 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/242/srpasucarb_28.###
Images:
1 - 360
Beam:
(145.3, 155.51) -> (145.3, 155.6)
Distance:
270.0 -> 269.63
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.8 | 4.89 | 1.8 |
| Low resolution limit | 85.3 | 85.4 | 1.83 |
| Completeness | 98.2 | 99.3 | 80.7 |
| Multiplicity | 6.9 | 6.8 | 4.8 |
| I/sigma | 9.4 | 26.3 | 0.7 |
| Rmerge | 0.113 | 0.046 | 2.48 |
| CC half | 0.998 | 0.997 | 0.304 |
| Anomalous completeness | 97.2 | 97.3 | 78.4 |
| Anomalous multiplicity | 3.6 | 3.6 | 3.6 |
| Cell | 174.48 | 46.97 | 63.98 | 90.0 | 102.1 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/242/srpasucarb_28.###
Images:
1 - 360
Beam:
(145.3, 155.51) -> (145.3, 155.69)
Distance:
270.0 -> 269.77
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.76 | 4.79 | 1.76 |
| Low resolution limit | 85.48 | 85.58 | 1.79 |
| Completeness | 96.5 | 100.0 | 69.6 |
| Multiplicity | 6.7 | 7.2 | 4.2 |
| I/sigma | 7.8 | 24.9 | 16.3 |
| Rmerge | 0.326 | 0.073 | 0.694 |
| CC half | 0.411 | 0.977 | 0.208 |
| Anomalous completeness | 95.7 | 100.0 | 66.8 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 174.876 | 47.082 | 64.206 | 90.0 | 102.147 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
