X-Ray Diffraction data from selenomethionyl neurexin 1alpha ectodomain, source of 3QCW structure

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Data DOI: 10.15785/SBGRID/218 | ID: 218

Publication DOI: 10.1016/j.str.2011.03.012

3QCW Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rudenko Laboratory, University of Texas Medical Branch

Release Date: Jan. 12, 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/218

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/218 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/218 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/218 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/218 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 218 ; shasum -c files.sha'

Storage requirements: 15G

Biological Sample:

selenomethionyl neurexin 1alpha ectodomain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 21-ID-D

Data Creation Date:

April 11, 2008

Related Datasets:

78


Cite this Dataset

Rudenko, G. 2016. "X-Ray Diffraction data for: selenomethionyl neurexin 1alpha ectodomain. PDB Code 3QCW", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/218.

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Dataset Description

selenomethionyl neurexin 1alpha ectodomain

Project Members

Name Additional Roles Affiliation While Working on the Project
Gabrielle RudenkoData Collector, DepositorUniversity of Michigan
Gabrielle RudenkoPIUniversity of Texas Medical Branch

Reprocessing Instructions

HKL2000

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=2d mosflm_beam_centre=160.41,148.65 read_all_image_headers=False /programs/datagrid//218/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3d mosflm_beam_centre=160.41,148.65 read_all_image_headers=False /programs/datagrid//218/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3dii mosflm_beam_centre=160.41,148.65 read_all_image_headers=False /programs/datagrid//218/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=dials mosflm_beam_centre=160.41,148.65 read_all_image_headers=False /programs/datagrid//218/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97919

Sweep:

SWEEP4

Files:

/programs/datagrid/218/s007_2_B.###

Images:

1 - 115

Beam:

(160.41, 148.65) -> (160.41, 149.18)

Distance:

450.0 -> 447.19

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.18 8.62 3.18
Low resolution limit 115.02 115.1 3.23
Completeness 94.8 99.3 45.5
Multiplicity 3.9 3.9 1.6
I/sigma 6.6 15.9 1.0
Rmerge 0.122 0.029 0.946
CC half 0.992 0.997 0.506
Anomalous completeness 93.0 95.6 23.1
Anomalous multiplicity 2.0 2.0 2.0
Cell 60.949 115.106 160.311 89.386 89.879 87.918
This dataset is part of the SBDB Pilot Reference Collection, and has processed intensities available from that collection.

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.