X-Ray Diffraction data from Structure of B. abortus WrbA-related protein A (apo-WrpA), source of 5F51 structure

Data DOI: 10.15785/SBGRID/203 | ID: 203

Publication DOI: 10.1128/JB.00982-15

5F51 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Crosson Laboratory, University of Chicago

Release Date: Dec. 15, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/203

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/203 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/203 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/203 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/203 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 203 ; shasum -c files.sha'

Storage requirements: 3.0G

Biological Sample:

Structure of B. abortus WrbA-related protein A (apo-WrpA)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

21-ID-F

Data Creation Date:

Oct. 7, 2013

Related Datasets:

None


Cite this Dataset

Herrou, J; Crosson, S. 2015. "X-Ray Diffraction data for: Structure of B. abortus WrbA-related protein A (apo-WrpA). PDB Code 5F51", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/203.

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Dataset Description

Native diffraction dataset of B. abortus WrpA protein

Project Members

Name Additional Roles Affiliation While Working on the Project
Julien HerrouData CollectorUniversity of Chicago
Sean CrossonData Collector, Depositor, PIUniversity of Chicago

Reprocessing Instructions

Images processed in xia2 using -3d flag. Data were indexed in P4222 and scaled to 2.53 Angstrom resolution.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/203/JH23.###

Images:

15 - 180

Beam:

(112.37, 111.99) -> (112.37, 112.07)

Distance:

180.0 -> 180.55

Spacegroup:

P 42 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.57 6.97 2.57
Low resolution limit 44.22 44.23 2.61
Completeness 99.9 95.2 100.0
Multiplicity 12.7 9.7 13.4
I/sigma 10.3 12.0 5.2
Rmerge 0.144 0.111 0.364
CC half 0.982 0.968 0.982
Anomalous completeness 99.9 96.9 100.0
Anomalous multiplicity 7.1 7.1 7.1
Cell 61.127 61.127 128.102 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/203/JH23.###

Images:

15 - 180

Beam:

(112.37, 111.99) -> (112.37, 111.97)

Distance:

180.0 -> 180.79

Spacegroup:

P 42 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.88 7.79 2.88
Low resolution limit 35.06 35.06 2.93
Completeness 99.9 97.5 99.0
Multiplicity 12.3 9.9 12.9
I/sigma 29.9 40.4 9.6
Rmerge 0.056 0.054 0.271
CC half 0.998 0.997 0.99
Anomalous completeness 99.7 98.9 98.8
Anomalous multiplicity 7.0 7.0 7.0
Cell 61.26 61.26 128.27 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/203/JH23.###

Images:

15 - 180

Beam:

(112.37, 111.99) -> (112.37, 111.97)

Distance:

180.0 -> 180.8

Spacegroup:

P 42 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.1 8.4 3.1
Low resolution limit 44.3 44.31 3.15
Completeness 99.9 97.3 100.0
Multiplicity 12.2 9.5 13.0
I/sigma 33.9 40.1 16.7
Rmerge 0.054 0.055 0.137
CC half 0.998 0.997 0.997
Anomalous completeness 99.8 98.5 100.0
Anomalous multiplicity 7.0 7.0 7.0
Cell 61.26 61.26 128.28 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/203/JH23.###

Images:

15 - 180

Beam:

(112.37, 111.99) -> (112.37, 112.03)

Distance:

180.0 -> 183.32

Spacegroup:

P 42 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.4 6.51 2.4
Low resolution limit 62.44 62.46 2.44
Completeness 99.7 95.9 95.1
Multiplicity 12.9 10.6 13.2
I/sigma 15.7 38.0 1.0
Rmerge 0.069 0.041 2.496
CC half 0.999 0.999 0.637
Anomalous completeness 99.7 98.0 95.2
Anomalous multiplicity 7.2 7.2 7.2
Cell 62.436 62.436 131.032 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.