X-Ray Diffraction data from Brucella abortus WrbA-related protein A (WrpA), source of 5F4B structure

Data DOI: 10.15785/SBGRID/202 | ID: 202

Publication DOI: 10.1128/JB.00982-15

5F4B Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Crosson Laboratory, University of Chicago

Release Date: Dec. 15, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/202

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/202 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/202 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/202 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/202 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 202 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

Brucella abortus WrbA-related protein A (WrpA)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID; Advanced Photon Source

Data Creation Date:

July 1, 2015

Related Datasets:

None


Cite this Dataset

Babnigg, G; Herrou, J; Joachimiak, A; Kim, Y; Crosson, S. 2015. "X-Ray Diffraction data for: Brucella abortus WrbA-related protein A (WrpA). PDB Code 5F4B", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/202.

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Dataset Description

SeMet dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Gyorgy BabniggArgonne National Laboratory
Julien HerrouUniversity of Chicago
Andrzej JoachimiakArgonne National Laboratory
Youngchang KimData CollectorArgonne National Laboratory
Sean CrossonDepositor, PIUniversity of Chicago

Reprocessing Instructions

Data were processed in HKL3000 and indexed in P43212. Only the first 75 images of 120 were processed due to radiation damage.

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97924

Sweep:

SWEEP1

Files:

/programs/datagrid/202/m2a8g3.####.img

Images:

3 - 120

Beam:

(154.5, 159.98) -> (154.5, 162.59)

Distance:

370.06 -> 371.72

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.43 6.59 2.43
Low resolution limit 37.84 37.85 2.47
Completeness 100.0 100.0 100.0
Multiplicity 8.8 7.4 8.0
I/sigma 4.9 10.9 1.1
Rmerge 0.277 0.102 1.671
CC half 0.989 0.99 0.472
Anomalous completeness 98.6 96.9 99.7
Anomalous multiplicity 4.9 4.9 4.9
Cell 63.93 63.93 189.21 90.0 90.0 90.0

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.