X-Ray Diffraction data from Lin28/let-7f-1 microRNA complex, source of 3TS0 structure

Data DOI: 10.15785/SBGRID/2 | ID: 2

Publication DOI: 10.1016/j.cell.2011.10.020

3TS0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Sliz Laboratory, Harvard Medical School

Release Date: April 10, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/2

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/2 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/2 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/2 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/2 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 2 ; shasum -c files.sha'

Storage requirements: 1.8G

Biological Sample:

Lin28/let-7f-1 microRNA complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein, RNA

Collection Facility:

NSLS X25

Data Creation Date:

Sept. 6, 2010

Related Datasets:

None


Cite this Dataset

Nam, Y; Sliz, P. 2015. "X-Ray Diffraction data for: Lin28/let-7f-1 microRNA complex. PDB Code 3TS0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/2.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Yunsun NamData CollectorHarvard Medical School
Piotr SlizDepositor, PIHarvard Medical School

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/2/yn193_9_###.img

Images:

1 - 102

Beam:

(158.0, 158.0) -> (158.0, 157.57)

Distance:

400.0 -> 400.06

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.5 6.78 2.5
Low resolution limit 72.93 72.96 2.54
Completeness 100.0 99.8 100.0
Multiplicity 7.7 7.0 5.2
I/sigma 16.3 42.5 0.9
Rmerge 0.077 0.027 1.841
CC half 0.999 0.999 0.396
Anomalous completeness 100.0 99.3 100.0
Anomalous multiplicity 4.1 4.1 4.1
Cell 139.776 139.776 85.491 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/2/yn193_9_###.img

Images:

1 - 102

Beam:

(158.0, 158.0) -> (158.0, 157.55)

Distance:

400.0 -> 400.06

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.57 6.96 2.57
Low resolution limit 39.29 39.29 2.61
Completeness 99.7 99.7 99.9
Multiplicity 8.0 7.0 6.6
I/sigma 21.6 55.7 1.1
Rmerge 0.057 0.021 1.531
CC half 0.999 0.999 0.666
Anomalous completeness 99.5 99.2 99.5
Anomalous multiplicity 4.3 4.3 4.3
Cell 139.87 139.87 85.55 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/2/yn193_9_###.img

Images:

1 - 102

Beam:

(158.0, 158.0) -> (158.0, 157.55)

Distance:

400.0 -> 400.19

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.56 6.95 2.56
Low resolution limit 64.7 64.72 2.6
Completeness 99.7 99.6 99.9
Multiplicity 8.0 7.0 6.4
I/sigma 21.3 55.5 1.0
Rmerge 0.057 0.021 1.689
CC half 0.999 0.999 0.568
Anomalous completeness 99.5 99.0 99.2
Anomalous multiplicity 4.3 4.3 4.3
Cell 139.87 139.87 85.55 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/2/yn193_9_###.img

Images:

1 - 102

Beam:

(158.0, 158.0) -> (158.0, 157.55)

Distance:

400.0 -> 400.32

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.55 6.92 2.55
Low resolution limit 73.02 73.05 2.59
Completeness 100.0 99.7 100.0
Multiplicity 8.0 7.2 6.0
I/sigma 18.7 48.8 1.0
Rmerge 0.061 0.023 1.633
CC half 0.999 0.999 0.644
Anomalous completeness 100.0 99.3 100.0
Anomalous multiplicity 4.3 4.3 4.3
Cell 139.95 139.95 85.587 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.