X-Ray Diffraction data from The extracellular domain of glycoprotein B from Human Cytomegalovirus, source of 5CXF structure

Data DOI: 10.15785/SBGRID/194 | ID: 194

Publication DOI: 10.1371/journal.ppat.1005227

5CXF Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Heldwein Laboratory, Tufts University School of Medicine

Release Date: Nov. 13, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/194

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/194 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/194 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/194 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/194 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 194 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

The extracellular domain of glycoprotein B from Human Cytomegalovirus

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

24-ID-E, NE-CAT, APS, Chicago, IL

Data Creation Date:

Nov. 15, 2014

Related Datasets:

None


Cite this Dataset

Burke, HG; Heldwein, EE. 2015. "X-Ray Diffraction data for: The extracellular domain of glycoprotein B from Human Cytomegalovirus. PDB Code 5CXF", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/194.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Ekaterina E HeldweinDepositorTufts University
Heidi G BurkeData CollectorTufts University
Ekaterina E HeldweinPITufts University School of Medicine

Reprocessing Instructions

For best statistics, process only first 100 frames.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97921

Sweep:

SWEEP1

Files:

/programs/datagrid/194/T7ME294b_1_###.img

Images:

1 - 120

Beam:

(150.91, 158.67) -> (150.91, 158.74)

Distance:

450.0 -> 451.76

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.31 8.98 3.31
Low resolution limit 122.04 122.12 3.37
Completeness 99.6 97.1 100.0
Multiplicity 4.8 4.5 4.9
I/sigma 5.3 19.3 1.0
Rmerge 0.285 0.045 1.632
CC half 0.986 0.997 0.332
Anomalous completeness 98.0 96.2 98.7
Anomalous multiplicity 2.5 2.5 2.5
Cell 92.225 134.031 295.123 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97921

Sweep:

SWEEP1

Files:

/programs/datagrid/194/T7ME294b_1_###.img

Images:

1 - 120

Beam:

(150.91, 158.67) -> (150.91, 158.69)

Distance:

450.0 -> 450.71

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.34 11.75 4.34
Low resolution limit 57.65 57.66 4.41
Completeness 99.2 96.4 99.4
Multiplicity 4.8 4.3 4.9
I/sigma 12.2 31.4 5.5
Rmerge 0.091 0.028 0.267
CC half 0.998 0.999 0.988
Anomalous completeness 96.4 93.5 96.8
Anomalous multiplicity 2.6 2.6 2.6
Cell 134.13 295.61 92.16 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97921

Sweep:

SWEEP1

Files:

/programs/datagrid/194/T7ME294b_1_###.img

Images:

1 - 120

Beam:

(150.91, 158.67) -> (150.91, 158.69)

Distance:

450.0 -> 450.69

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.54 12.32 4.54
Low resolution limit 122.14 122.19 4.62
Completeness 99.0 94.7 99.1
Multiplicity 4.8 4.3 4.9
I/sigma 13.1 31.5 6.8
Rmerge 0.082 0.028 0.203
CC half 0.998 0.999 0.986
Anomalous completeness 96.2 92.9 96.4
Anomalous multiplicity 2.6 2.6 2.6
Cell 134.13 295.61 92.16 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97921

Sweep:

SWEEP1

Files:

/programs/datagrid/194/T7ME294b_1_###.img

Images:

1 - 120

Beam:

(150.91, 158.67) -> (150.91, 158.67)

Distance:

450.0 -> 453.0

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.44 9.32 3.44
Low resolution limit 57.88 57.89 3.5
Completeness 99.2 97.9 91.6
Multiplicity 4.9 4.6 5.1
I/sigma 5.8 19.0 1.1
Rmerge 0.214 0.036 1.96
CC half 0.993 0.999 0.477
Anomalous completeness 97.8 97.5 90.8
Anomalous multiplicity 2.6 2.6 2.6
Cell 92.543 134.654 296.702 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.