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X-Ray Diffraction data from Prefusion-stabilized RSV F Ectodomain (SC-TM), source of 5C6B structure

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Data DOI: 10.15785/SBGRID/192 | ID: 192

Publication DOI: 10.1038/ncomms9143

5C6B Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

McLellan Laboratory, University of Texas at Austin

Release Date: 30 Oct 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/192

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/192 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/192 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/192 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/192 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 192 ; shasum -c files.sha'

Storage requirements: 1.6G

Biological Sample:

Prefusion-stabilized RSV F Ectodomain (SC-TM)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

19-ID, SBC, APS, Chicago, IL

Data Creation Date:

11 Nov 2014

Related Datasets:

None


Cite this Dataset

McLellan, JS. 2015. "X-Ray Diffraction data for: Prefusion-stabilized RSV F Ectodomain (SC-TM). PDB Code 5C6B", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/192.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Jason S McLellanData Collector, DepositorGeisel School of Medicine at Dartmouth
Jason McLellanPIUniversity of Texas at Austin

Reprocessing Instructions

Beam center, as defined in the header, needs to be corrected to X=153.1 Y=162.6 Processing with iMosflm will require "Reverse direction of spindle rotation" to be checked

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d mosflm_beam_centre=153.1,162.6 /programs/datagrid//192/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii mosflm_beam_centre=153.1,162.6 /programs/datagrid//192/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials mosflm_beam_centre=153.1,162.6 /programs/datagrid//192/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.