X-Ray Diffraction data from PRV NEC, source of 4Z3U structure

Data DOI: 10.15785/SBGRID/188 | ID: 188

Publication DOI: 10.15252/embj.201592359

4Z3U Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Heldwein Laboratory, Tufts University School of Medicine

Release Date: Oct. 30, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/188

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/188 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/188 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/188 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/188 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 188 ; shasum -c files.sha'

Storage requirements: 3.5G

Biological Sample:

PRV NEC

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

June 13, 2014

Related Datasets:

None


Cite this Dataset

Bigalke, JM; Heldwein, EE. 2015. "X-Ray Diffraction data for: PRV NEC. PDB Code 4Z3U", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/188.

Download Citation

Dataset Description

Soluble portion of pseudorabies virus nuclear egress complex.

Project Members

Name Additional Roles Affiliation While Working on the Project
Janna M BigalkeData Collector, DepositorTufts University School of Medicine
Ekaterina E Heldwein, PITufts University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/188/140613_Se_9_1_####.cbf

Images:

1 - 600

Beam:

(216.99, 220.59) -> (216.99, 220.65)

Distance:

580.0 -> 581.81

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.51 6.81 2.51
Low resolution limit 109.1 109.2 2.55
Completeness 99.4 100.0 93.3
Multiplicity 6.9 7.0 3.5
I/sigma 6.2 11.4 0.9
Rmerge 0.165 0.098 1.281
CC half 0.994 0.996 0.394
Anomalous completeness 96.9 99.7 75.5
Anomalous multiplicity 3.7 3.7 3.7
Cell 124.747 124.747 109.098 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/188/140613_Se_9_1_####.cbf

Images:

1 - 600

Beam:

(216.99, 220.59) -> (216.99, 220.52)

Distance:

580.0 -> 584.73

Spacegroup:

P 42 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.54 6.89 2.54
Low resolution limit 109.26 109.36 2.58
Completeness 99.4 99.9 96.9
Multiplicity 7.9 7.5 4.6
I/sigma 11.4 25.7 1.0
Rmerge 0.093 0.052 1.302
CC half 0.997 0.997 0.421
Anomalous completeness 98.4 98.5 90.4
Anomalous multiplicity 4.3 4.3 4.3
Cell 125.49 125.49 109.26 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/188/140613_Se_9_1_####.cbf

Images:

1 - 600

Beam:

(216.99, 220.59) -> (216.99, 220.51)

Distance:

580.0 -> 583.05

Spacegroup:

P 42 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.54 6.89 2.54
Low resolution limit 109.26 109.36 2.58
Completeness 99.3 99.6 96.9
Multiplicity 7.9 7.5 4.6
I/sigma 11.4 25.6 0.9
Rmerge 0.094 0.052 1.313
CC half 0.997 0.997 0.43
Anomalous completeness 98.4 98.3 90.5
Anomalous multiplicity 4.3 4.3 4.3
Cell 125.5 125.5 109.26 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP1

Files:

/programs/datagrid/188/140613_Se_9_1_####.cbf

Images:

1 - 600

Beam:

(216.99, 220.59) -> (216.99, 220.52)

Distance:

580.0 -> 584.97

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.46 6.69 2.46
Low resolution limit 109.69 109.8 2.51
Completeness 98.8 100.0 82.9
Multiplicity 7.3 7.5 3.5
I/sigma 7.1 13.1 0.9
Rmerge 0.126 0.065 1.166
CC half 0.997 0.998 0.517
Anomalous completeness 96.1 99.8 65.5
Anomalous multiplicity 3.9 3.9 3.9
Cell 125.928 125.928 109.687 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.