X-Ray Diffraction data from capsid protein (N-terminal domain) from Bovine Leukemia Virus, source of 4PH3 structure

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Data DOI: 10.15785/SBGRID/177 | ID: 177

Publication DOI: 10.1126/science.aaa5182

4PH3 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Buschiazzo Laboratory, Institut Pasteur de Montevideo

Release Date: Oct. 6, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/177

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/177 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/177 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/177 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/177 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 177 ; shasum -c files.sha'

Storage requirements: 1.2G

Biological Sample:

capsid protein (N-terminal domain) from Bovine Leukemia Virus

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

home source (Micromax007-HF/Varimax-HF/Mar345)

Data Creation Date:

May 13, 2011

Related Datasets:

None


Cite this Dataset

Buschiazzo, A. 2015. "X-Ray Diffraction data for: capsid protein (N-terminal domain) from Bovine Leukemia Virus. PDB Code 4PH3", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/177.

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Dataset Description

immature NTD domain (one extra residue at the N-terminus, before the mature Pro) / SAD dataset (quick iodide soak) collected at Cu Ka wavelength

Project Members

Name Additional Roles Affiliation While Working on the Project
Alejandro BuschiazzoData Collector, DepositorUnit of Protein Crystallography / Institut Pasteur de Montevideo
Alejandro BuschiazzoPIInstitut Pasteur de Montevideo

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=2d /programs/datagrid//177/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3d /programs/datagrid//177/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=3dii /programs/datagrid//177/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.11.4/dials-1.11.4/build/bin/xia2 pipeline=dials /programs/datagrid//177/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.