Data DOI: 10.15785/SBGRID/177 | ID: 177
Publication DOI: 10.1126/science.aaa5182
4PH3 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Buschiazzo Laboratory, Institut Pasteur de Montevideo
Release Date: Oct. 6, 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/177
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/177 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/177 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/177 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/177 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 177 ; shasum -c files.sha'
Storage requirements: 1.2G
Biological Sample:
capsid protein (N-terminal domain) from Bovine Leukemia Virus
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
home source (Micromax007-HF/Varimax-HF/Mar345)
Data Creation Date:
May 13, 2011
Related Datasets:
None
Buschiazzo, A. 2015. "X-Ray Diffraction data for: capsid protein (N-terminal domain) from Bovine Leukemia Virus. PDB Code 4PH3", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/177.
immature NTD domain (one extra residue at the N-terminus, before the mature Pro) / SAD dataset (quick iodide soak) collected at Cu Ka wavelength
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Alejandro Buschiazzo | Data Collector, Depositor | Unit of Protein Crystallography / Institut Pasteur de Montevideo |
| Alejandro Buschiazzo | PI | Institut Pasteur de Montevideo |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP1
Files:
/programs/datagrid/177/NTD_3B6_NaI_x1_2_set_###.mar2300
Images:
1 - 360
Beam:
(172.5, 172.5) -> (172.5, 172.49)
Distance:
225.0 -> 225.72
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.42 | 6.55 | 2.42 |
| Low resolution limit | 30.65 | 30.65 | 2.46 |
| Completeness | 100.0 | 100.0 | 98.7 |
| Multiplicity | 14.0 | 12.5 | 13.0 |
| I/sigma | 34.7 | 70.7 | 8.1 |
| Rmerge | 0.052 | 0.022 | 0.317 |
| CC half | 0.999 | 0.999 | 0.978 |
| Anomalous completeness | 99.9 | 100.0 | 97.1 |
| Anomalous multiplicity | 7.5 | 7.5 | 7.5 |
| Cell | 65.61 | 66.24 | 81.35 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP1
Files:
/programs/datagrid/177/NTD_3B6_NaI_x1_2_set_###.mar2300
Images:
1 - 360
Beam:
(172.5, 172.5) -> (172.5, 172.5)
Distance:
225.0 -> 225.29
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.42 | 6.56 | 2.42 |
| Low resolution limit | 40.67 | 40.68 | 2.46 |
| Completeness | 100.0 | 100.0 | 98.7 |
| Multiplicity | 14.0 | 12.4 | 13.0 |
| I/sigma | 34.6 | 70.2 | 8.1 |
| Rmerge | 0.052 | 0.022 | 0.317 |
| CC half | 0.999 | 0.999 | 0.977 |
| Anomalous completeness | 99.9 | 100.0 | 97.3 |
| Anomalous multiplicity | 7.5 | 7.5 | 7.5 |
| Cell | 65.61 | 66.24 | 81.35 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP1
Files:
/programs/datagrid/177/NTD_3B6_NaI_x1_2_set_###.mar2300
Images:
1 - 360
Beam:
(172.5, 172.5) -> (172.5, 172.48)
Distance:
225.0 -> 224.92
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.13 | 5.79 | 2.13 |
| Low resolution limit | 65.55 | 65.58 | 2.17 |
| Completeness | 92.6 | 100.0 | 64.9 |
| Multiplicity | 12.6 | 13.3 | 6.8 |
| I/sigma | 16.0 | 51.8 | 0.0 |
| Rmerge | 0.062 | 0.03 | -0.108 |
| CC half | 0.997 | 0.999 | 0.203 |
| Anomalous completeness | 92.2 | 100.0 | 68.1 |
| Anomalous multiplicity | 6.7 | 6.7 | 6.7 |
| Cell | 65.547 | 66.196 | 81.312 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
