X-Ray Diffraction data from Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA), source of structure

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Data DOI: 10.15785/SBGRID/176 | ID: 176

Publication DOI: 10.1038/nsmb.2998

Schwartz Laboratory, Massachusetts Institute of Technology

Release Date: Sept. 25, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/176

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/176 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/176 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/176 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/176 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 176 ; shasum -c files.sha'

Storage requirements: 8.4G

Biological Sample:

Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline 24-ID-C, NE-CAT, APS, Chicago, IL

Data Creation Date:

Feb. 21, 2014

Related Datasets:

None


Cite this Dataset

Knockenhauer, KE; Kelley, K; Schwartz, T. 2015. "X-Ray Diffraction data for: Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA).", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/176.

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Dataset Description

SeMet dataset, all proteins derivatized

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin E KnockenhauerData Collector, DepositorGraduate Student
Kotaro KelleyData CollectorGraduate Student
Thomas SchwartzPIMassachusetts Institute of Technology

Reprocessing Instructions

Pilatus 6M-F detector, Space group P1

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9789

Sweep:

SWEEP1

Files:

/programs/datagrid/176/hse_5_10_1_####.cbf

Images:

1 - 1440

Beam:

(216.67, 220.51) -> (216.67, 220.47)

Distance:

750.0 -> 749.18

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.95 13.43 4.95
Low resolution limit 106.0 106.02 5.04
Completeness 95.0 93.0 93.9
Multiplicity 7.4 7.3 7.0
I/sigma 10.7 33.9 2.7
Rmerge 0.126 0.04 0.645
CC half 0.997 0.999 0.887
Anomalous completeness 90.1 87.4 87.5
Anomalous multiplicity 3.8 3.8 3.8
Cell 107.47 118.91 162.88 80.39 74.35 63.21

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9789

Sweep:

SWEEP1

Files:

/programs/datagrid/176/hse_5_10_1_####.cbf

Images:

1 - 1440

Beam:

(216.67, 220.51) -> (216.67, 220.48)

Distance:

750.0 -> 746.94

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.9 10.57 3.9
Low resolution limit 105.86 105.9 3.96
Completeness 93.8 94.9 89.1
Multiplicity 7.3 7.5 7.2
I/sigma 6.4 29.9 1.2
Rmerge 0.223 0.041 1.709
CC half 0.998 1.0 0.601
Anomalous completeness 87.7 89.1 83.1
Anomalous multiplicity 3.8 3.8 3.8
Cell 107.432 118.743 162.791 80.456 74.389 63.22

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.